| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,374,679 – 24,374,731 |
| Length | 52 |
| Max. P | 0.860882 |
| Location | 24,374,679 – 24,374,731 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 87.17 |
| Shannon entropy | 0.22459 |
| G+C content | 0.54165 |
| Mean single sequence MFE | -17.54 |
| Consensus MFE | -16.68 |
| Energy contribution | -16.52 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24374679 52 + 27905053 GAGGGGGCAA-AGAUUCCACUCGGGUGGUCCUCCUAUUGGAAGAUUCACGUUG (((((((...-...)))).)))..((((((.(((....))).)).)))).... ( -14.20, z-score = 0.03, R) >droEre2.scaffold_4820 6811106 53 - 10470090 GAGGGGGUGAAAUAUUCCACUCGGGUGGUCUUUCUUCUGGAAGAUCCACGCUG (((((((((...)))))).)))(.((((((((((....)))))).)))).).. ( -21.00, z-score = -2.71, R) >droYak2.chr3R 6710766 53 - 28832112 GAGGGGGCGAAAUAUUCCACUCGGGUGGUCUUCCUUCAAGAAGAUCCGCGCUG (((((((.......)))).)))(.(((((((((......))))).)))).).. ( -17.40, z-score = -0.95, R) >droSec1.super_22 977633 53 + 1066717 GAGGGGGCAAGAUAUUCCACUCGGGUGGUCUUCCUUCUGGAAGAUUCACGUUG (((((((.......)))).)))..((((((((((....)))))).)))).... ( -17.80, z-score = -1.42, R) >droSim1.chr3R 24065754 53 + 27517382 GAGGGGGCAAGAGAUUCCACUCCGGUGGUCUUCCUUCUGGAAGAUUCACGUUG ((((((((....).)))).)))..((((((((((....)))))).)))).... ( -17.30, z-score = -0.53, R) >consensus GAGGGGGCAAAAUAUUCCACUCGGGUGGUCUUCCUUCUGGAAGAUUCACGUUG (((.(((........))).)))..((((((((((....)))))).)))).... (-16.68 = -16.52 + -0.16)
| Location | 24,374,679 – 24,374,731 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 87.17 |
| Shannon entropy | 0.22459 |
| G+C content | 0.54165 |
| Mean single sequence MFE | -12.82 |
| Consensus MFE | -12.84 |
| Energy contribution | -11.92 |
| Covariance contribution | -0.92 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.97 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24374679 52 - 27905053 CAACGUGAAUCUUCCAAUAGGAGGACCACCCGAGUGGAAUCU-UUGCCCCCUC ....(..((((((((....))))))((((....))))....)-)..)...... ( -13.10, z-score = -1.06, R) >droEre2.scaffold_4820 6811106 53 + 10470090 CAGCGUGGAUCUUCCAGAAGAAAGACCACCCGAGUGGAAUAUUUCACCCCCUC ..(.((((.((((.(....).)))))))).)..(((((....)))))...... ( -10.40, z-score = -0.66, R) >droYak2.chr3R 6710766 53 + 28832112 CAGCGCGGAUCUUCUUGAAGGAAGACCACCCGAGUGGAAUAUUUCGCCCCCUC ....(((((((((((....))))))((((....)))).....)))))...... ( -15.20, z-score = -1.28, R) >droSec1.super_22 977633 53 - 1066717 CAACGUGAAUCUUCCAGAAGGAAGACCACCCGAGUGGAAUAUCUUGCCCCCUC ....(..(.((((((....))))))((((....))))......)..)...... ( -12.70, z-score = -1.59, R) >droSim1.chr3R 24065754 53 - 27517382 CAACGUGAAUCUUCCAGAAGGAAGACCACCGGAGUGGAAUCUCUUGCCCCCUC ....(..(.((((((....))))))((((....))))......)..)...... ( -12.70, z-score = -0.25, R) >consensus CAACGUGAAUCUUCCAGAAGGAAGACCACCCGAGUGGAAUAUCUUGCCCCCUC ....((((.((((((....))))))((((....))))......))))...... (-12.84 = -11.92 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:32 2011