| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,373,914 – 24,374,009 |
| Length | 95 |
| Max. P | 0.842755 |
| Location | 24,373,914 – 24,374,009 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 93.08 |
| Shannon entropy | 0.11661 |
| G+C content | 0.60583 |
| Mean single sequence MFE | -34.46 |
| Consensus MFE | -30.45 |
| Energy contribution | -30.45 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24373914 95 + 27905053 GCCCACUUGAGUGGGCACCUACCGCAGCGUCGGCAUCUCGGCAUCUCGGCUUUCAAGGGUUAAGCGAGGUUCUCCUCUCGAUCGCUUGGGUUGGG ((((((....)))))).((.(((.((((((((((......))..((..((((....))))..)).((((....)))).))).))).))))).)). ( -36.40, z-score = -1.28, R) >droEre2.scaffold_4820 6810359 86 - 10470090 GCCCACUUGAGUGGGCACCUACCACAGCGUCGGCAUCUCGGC--------UUUCAAGGGUUAAGCGGGGUUCUCCUCUCGAUCGGUUGGGUUGG- ((((((....)))))).((.(((.(((((((((....)))))--------.......(((..((.(((....))).))..))).))))))).))- ( -33.60, z-score = -1.70, R) >droYak2.chr3R 6709992 86 - 28832112 GCCCACUUGAGUGGGCACCUACCACAGCGUCGGCAUCUCGGC--------UUUCAAGGGUUAAGCGGGGUUCUCCUCUCGAUCGCCUGGCUUGG- ((((((....)))))).....(((.((((((((....)))))--------......((((...(.((((....)))).)....)))).))))))- ( -30.60, z-score = -0.72, R) >droSec1.super_22 976882 86 + 1066717 GCCCACUUGAGUGGGCACCUACCACAGCGUCGGCAUCUCGGC--------UUUCAAGGGUUAAGCGAGGUUCUCCUCUCGAUCGCUUGGGUUGG- ((((((....)))))).((.(((..((((((((...((..((--------((....))))..)).((((....)))))))).))))..))).))- ( -34.80, z-score = -2.46, R) >droSim1.chr3R 24065003 86 + 27517382 GCCCACUUGAGUGGGCACCUACCACAGCGUCGGCAUCUCGGC--------UCUCAAGGGUUAAGCGAGGUUCUCCUCUCGAUCGCUUGGGUUGG- ((((((....)))))).((.(((..((((((((...((..((--------((....))))..)).((((....)))))))).))))..))).))- ( -36.90, z-score = -2.93, R) >consensus GCCCACUUGAGUGGGCACCUACCACAGCGUCGGCAUCUCGGC________UUUCAAGGGUUAAGCGAGGUUCUCCUCUCGAUCGCUUGGGUUGG_ ((((((....)))))).((..(((.(((((((((..(((.................)))....))((((....)))).))).)))))))...)). (-30.45 = -30.45 + -0.00)
| Location | 24,373,914 – 24,374,009 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 93.08 |
| Shannon entropy | 0.11661 |
| G+C content | 0.60583 |
| Mean single sequence MFE | -29.82 |
| Consensus MFE | -26.10 |
| Energy contribution | -26.74 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24373914 95 - 27905053 CCCAACCCAAGCGAUCGAGAGGAGAACCUCGCUUAACCCUUGAAAGCCGAGAUGCCGAGAUGCCGACGCUGCGGUAGGUGCCCACUCAAGUGGGC .((.(((((.(((.(((.((((....))))........((((.....))))............)))))))).))).)).((((((....)))))) ( -32.00, z-score = -1.87, R) >droEre2.scaffold_4820 6810359 86 + 10470090 -CCAACCCAACCGAUCGAGAGGAGAACCCCGCUUAACCCUUGAAA--------GCCGAGAUGCCGACGCUGUGGUAGGUGCCCACUCAAGUGGGC -((.(((((..((.(((((.((......)).)).....((((...--------..))))....))))).)).))).)).((((((....)))))) ( -23.40, z-score = -0.56, R) >droYak2.chr3R 6709992 86 + 28832112 -CCAAGCCAGGCGAUCGAGAGGAGAACCCCGCUUAACCCUUGAAA--------GCCGAGAUGCCGACGCUGUGGUAGGUGCCCACUCAAGUGGGC -....(((.(((..(((((.((..((......))..)))))))..--------)))....(((((......))))))))((((((....)))))) ( -29.90, z-score = -1.55, R) >droSec1.super_22 976882 86 - 1066717 -CCAACCCAAGCGAUCGAGAGGAGAACCUCGCUUAACCCUUGAAA--------GCCGAGAUGCCGACGCUGUGGUAGGUGCCCACUCAAGUGGGC -((.(((..((((.(((.((((....))))........((((...--------..))))....)))))))..))).)).((((((....)))))) ( -31.90, z-score = -2.81, R) >droSim1.chr3R 24065003 86 - 27517382 -CCAACCCAAGCGAUCGAGAGGAGAACCUCGCUUAACCCUUGAGA--------GCCGAGAUGCCGACGCUGUGGUAGGUGCCCACUCAAGUGGGC -((.(((..((((.(((.((((....))))........((((...--------..))))....)))))))..))).)).((((((....)))))) ( -31.90, z-score = -2.55, R) >consensus _CCAACCCAAGCGAUCGAGAGGAGAACCUCGCUUAACCCUUGAAA________GCCGAGAUGCCGACGCUGUGGUAGGUGCCCACUCAAGUGGGC .((.(((..((((.(((.((((....))))........((((.............))))....)))))))..))).)).((((((....)))))) (-26.10 = -26.74 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:31 2011