| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,363,928 – 24,364,026 |
| Length | 98 |
| Max. P | 0.784718 |
| Location | 24,363,928 – 24,364,026 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 88.37 |
| Shannon entropy | 0.23161 |
| G+C content | 0.42011 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -17.47 |
| Energy contribution | -18.61 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24363928 98 + 27905053 UAAUGGCCACACACAGG---CGAGAUACA-ACCUACA---AGAUACUCGGUUACUGAUUUACCGAGUGCGUUAAAACGUUUAGUUUGUGCCAUUAAACUACAGAC (((((((.(((.(((((---((((.....-..))...---.(.((((((((.........))))))))).......))))).)).)))))))))).......... ( -25.70, z-score = -2.82, R) >droSim1.chr3R 24054525 98 + 27517382 UAAUGGCCACACACAGG---CGAGAUACA-ACCUACA---AGAUACUCGGUUACUGAUUUACCGAGUGCGUUAAAACGUUUAGUUUGUGCCAUUAAACUACAGAC (((((((.(((.(((((---((((.....-..))...---.(.((((((((.........))))))))).......))))).)).)))))))))).......... ( -25.70, z-score = -2.82, R) >droSec1.super_22 967104 98 + 1066717 UAAUGGCCACACACAGG---CGAGAUACA-ACCUACA---AGAUACUCGGUUACUGAUUUACCGAGUGCGUUAAAACGUUUAGUUUGUGCCAUUAAACUACAGAC (((((((.(((.(((((---((((.....-..))...---.(.((((((((.........))))))))).......))))).)).)))))))))).......... ( -25.70, z-score = -2.82, R) >droYak2.chr3R 6698621 98 - 28832112 UAAUGGCCACACACAGG---CGAUAUACA-ACCUACA---AGAUACUCGCUUACUGAUUUACCGAGUGCGUUAAAACGUUUAGUUUGUGCCAUUAAACUACAAAC (((((((.(((.(((((---((((((...-.......---..))).))))))...............((((....))))...)).)))))))))).......... ( -19.40, z-score = -1.29, R) >droEre2.scaffold_4820 6798352 98 - 10470090 UAAUGGCCACACACAGG---CGAGAUACA-ACCUACA---AGAUACUCGGUUACUGAUUUACCGAGUGCGUUAAGACGUUUAGUUUGUGCCAUUAAACUACAGAC (((((((.(((.(((((---((((.....-..))...---.(.((((((((.........))))))))).......))))).)).)))))))))).......... ( -25.70, z-score = -2.72, R) >droAna3.scaffold_13340 17168020 102 + 23697760 UAAUGGCCACACACAGC---CAAACAAGGUACUGCUGGCCAGAUACUCGGUUACUGAUUUACCGAGCGCGUUAAAAUGUUUAGUUUGUGCCAUUAAACUACAGUC (((((((.(((...(((---.(((((.(((.......))).....((((((.........))))))..........))))).))))))))))))).......... ( -25.00, z-score = -0.69, R) >dp4.chr2 20632337 105 - 30794189 UAAUGGCCACACACAGAGCCCGAGACAGAGACAUACACUCAGAUACAGAGUUACUGAUUUACCGAGUGCGUUAAAACGUUUAGUUUGUACCAUUAAACUAGAGAC ((((((..(((.((.((((................(((((((((.(((.....)))))))...))))).((....)))))).)).))).)))))).......... ( -17.30, z-score = -0.88, R) >droPer1.super_0 10319996 105 + 11822988 UAAUGGCCACACACAGAGCCCGAGACAGAGACAUACACUCAGAUACAGAGUUACUGAUUUACCGAGUGCGUUAAAACGUUUAGUUUGUACCAUUAAACUAGAGAC ((((((..(((.((.((((................(((((((((.(((.....)))))))...))))).((....)))))).)).))).)))))).......... ( -17.30, z-score = -0.88, R) >consensus UAAUGGCCACACACAGG___CGAGAUACA_ACCUACA___AGAUACUCGGUUACUGAUUUACCGAGUGCGUUAAAACGUUUAGUUUGUGCCAUUAAACUACAGAC (((((((.(((.((..............................(((((((.........)))))))((((....))))...)).)))))))))).......... (-17.47 = -18.61 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:28 2011