| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,894,098 – 8,894,189 |
| Length | 91 |
| Max. P | 0.583263 |
| Location | 8,894,098 – 8,894,189 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.63 |
| Shannon entropy | 0.48559 |
| G+C content | 0.34349 |
| Mean single sequence MFE | -10.17 |
| Consensus MFE | -7.54 |
| Energy contribution | -7.51 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.583263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8894098 91 + 23011544 AAUUAGAAAUACAAAAGUCUACUACAAAAUAAUGCCCACAAUGGCAAAAACCACA--------------------UCAGCAGCAGGCA---CAACAAACAAUUUGUAAUUAACA ................((..(.((((((....((((......)))).........--------------------...((.....)).---..........)))))).)..)). ( -10.20, z-score = -0.69, R) >droGri2.scaffold_15126 473230 74 - 8399593 ------------------GGAAUAUAGAUAAAGCCCCACAAUGGCAACAACCACAA-------------------GCAGAUCUAGCCA---UAACAAAUCAUUUGUAAUUAACA ------------------((....(((((...((.......((....)).......-------------------))..))))).)).---..((((.....))))........ ( -9.84, z-score = -1.47, R) >droPer1.super_5 1692123 114 - 6813705 AAUAGAAAAACUACUCGUAUACUACAAAAUAAUACCCACAAUGGUAAGAAGCACACAAUGACAACGACAAUACUCUGAGCCACAGGCAACACCACAAACAAUUUGUAAUUAACA ................((....((((((....((((......))))................................(((...)))..............))))))....)). ( -9.60, z-score = 0.41, R) >dp4.chr4_group5 1712290 114 - 2436548 AAUAGAAAAACUACUCGUAUACUACAAAAUAAUACCCACAAUGGUAAGAAGCACACAAUGACAACGACAAUACUUCGAGCCACAGGCAACACCACAAACAAUUUGUAAUUAACA ................((....((((((.............((((..((((.....................))))..))))..(....)...........))))))....)). ( -11.50, z-score = -0.61, R) >droEre2.scaffold_4929 9487509 91 + 26641161 AAUUAGAAAUACAAAAGUCUACUACAAAAUAAUGCCCACAAUGGCAAAAACCACA--------------------UCAGCAGCAGGCA---CAACAAACAAUUUGUAAUUAACA ................((..(.((((((....((((......)))).........--------------------...((.....)).---..........)))))).)..)). ( -10.20, z-score = -0.69, R) >droYak2.chr2L 11542445 91 + 22324452 AAUUAGAAACACAAAAGUCUACUACAAAAUAAUGCCCACAAUGGCAAAAACCACA--------------------UCAGCAGCAGGCA---CAACAAACAAUUUGUAAUUAACA ................((..(.((((((....((((......)))).........--------------------...((.....)).---..........)))))).)..)). ( -10.20, z-score = -0.72, R) >droSec1.super_3 4368159 91 + 7220098 AAUUAGAAAUACAAAAGUCUACUACAAACUAAUGCCCACAAUGGCAAAAACCACA--------------------UCAGCAGCAGGCA---CAACAAACAAUUUGUAAUUAACA .........((((((.................((((......)))).........--------------------...((.....)).---..........))))))....... ( -9.90, z-score = -0.47, R) >droSim1.chr2L 8673210 91 + 22036055 AAUUAGAAAUACAAAAGUCUACUACCAAAUAAUGCCCACAAUGGCAAAAACCACA--------------------UCAGCAGCAGGCA---CAACAAACAAUUUGUAAUUAACA .........((((((.................((((......)))).........--------------------...((.....)).---..........))))))....... ( -9.90, z-score = -0.47, R) >consensus AAUUAGAAAUACAAAAGUCUACUACAAAAUAAUGCCCACAAUGGCAAAAACCACA____________________UCAGCAGCAGGCA___CAACAAACAAUUUGUAAUUAACA ......................((((((....((((......))))................................((.....))..............))))))....... ( -7.54 = -7.51 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:16 2011