| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,339,292 – 24,339,403 |
| Length | 111 |
| Max. P | 0.992167 |
| Location | 24,339,292 – 24,339,403 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 96.58 |
| Shannon entropy | 0.06078 |
| G+C content | 0.49369 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -26.72 |
| Energy contribution | -26.96 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24339292 111 + 27905053 UGCUCCUCCAGCUCAGGCUCCUACUCAGAUGCUCCUUCUGAGUAGUUGCUGUUGCUCUUGCCCGUUUGCCAUUGAGCGUUAUUGGAUUUCGUACUUUAUGCUCGCUUCUAG .((......(((...(((..(((((((((.......)))))))))..)))...))).................((((((....((........))..))))))))...... ( -30.30, z-score = -1.60, R) >droEre2.scaffold_4820 6773499 111 - 10470090 UGCUCCUCCAACUCAGACCCCUACUCAGAUGCUCCUUCUGAGUAGUUGCUGUUGCUCUUGCCCGUUUGCCAUUGAGCGUUAUUGGAUUUCGUACUUUAUGCCCGCUUCUAG .((...(((((..(((....(((((((((.......)))))))))...)))..((((..((......))....))))....)))))....(((.....)))..))...... ( -26.50, z-score = -2.17, R) >droYak2.chr3R 6673759 111 - 28832112 UGCUCCUCCAACUCAGGCUCCUACUCAAAUGCUCCUUCUGAGUAGUUGCUGUUGCUCUUGCCCGUUUGCCAUUGAGCGUUAUUGGAUUUCGUACUUUAUGCCCGCUUGUAG .((...(((((....(((..(((((((...........)))))))..)))...((((..((......))....))))....)))))....(((.....)))..))...... ( -23.30, z-score = -0.49, R) >droSec1.super_22 942484 111 + 1066717 UGCUCCUCCAACUCAGGCUCCUACUCAGAUGCUCCUUCUGAGUAGUUGCUGUUGCUCUUGCCCGUUUGCCAUUGAGCGUUAUUGGAUUUCGUACUUUAUGCUCGCUUCUAG .((...(((((....(((..(((((((((.......)))))))))..)))...((((..((......))....))))....)))))....(((.....)))..))...... ( -29.50, z-score = -2.03, R) >droSim1.chr3R 24029892 111 + 27517382 UGCUCCUCCAACUCAGGCUCCUACUCAGAUGCUCCUUCUGAGUAGUUGCUGUUGCUCUUGCCGGUGUGCCAUUGAGCGUUAUUGGAUUGCGUACUUUAUGCUCGCUUCUAG .((...(((((....(((..(((((((((.......)))))))))..)))...((((.....((....))...))))....)))))..(((((...)))))..))...... ( -33.30, z-score = -1.83, R) >consensus UGCUCCUCCAACUCAGGCUCCUACUCAGAUGCUCCUUCUGAGUAGUUGCUGUUGCUCUUGCCCGUUUGCCAUUGAGCGUUAUUGGAUUUCGUACUUUAUGCUCGCUUCUAG .((...(((((....(((..(((((((((.......)))))))))..)))...((((..((......))....))))....)))))....(((.....)))..))...... (-26.72 = -26.96 + 0.24)
| Location | 24,339,292 – 24,339,403 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 96.58 |
| Shannon entropy | 0.06078 |
| G+C content | 0.49369 |
| Mean single sequence MFE | -34.22 |
| Consensus MFE | -32.08 |
| Energy contribution | -32.12 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.91 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.52 |
| SVM RNA-class probability | 0.992167 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24339292 111 - 27905053 CUAGAAGCGAGCAUAAAGUACGAAAUCCAAUAACGCUCAAUGGCAAACGGGCAAGAGCAACAGCAACUACUCAGAAGGAGCAUCUGAGUAGGAGCCUGAGCUGGAGGAGCA ...((..((.((.....)).))...)).......((((..((((...(((((....((....))..(((((((((.......)))))))))..))))).))))...)))). ( -34.40, z-score = -2.69, R) >droEre2.scaffold_4820 6773499 111 + 10470090 CUAGAAGCGGGCAUAAAGUACGAAAUCCAAUAACGCUCAAUGGCAAACGGGCAAGAGCAACAGCAACUACUCAGAAGGAGCAUCUGAGUAGGGGUCUGAGUUGGAGGAGCA ......(((..(.....)..)....(((..((((((((....((......))..))))..((((..(((((((((.......)))))))))..).))).))))..))))). ( -34.80, z-score = -3.34, R) >droYak2.chr3R 6673759 111 + 28832112 CUACAAGCGGGCAUAAAGUACGAAAUCCAAUAACGCUCAAUGGCAAACGGGCAAGAGCAACAGCAACUACUCAGAAGGAGCAUUUGAGUAGGAGCCUGAGUUGGAGGAGCA ......(((..(.....)..)....(((..(((((((....)))...(((((....((....))..(((((((((.......)))))))))..))))).))))..))))). ( -31.80, z-score = -2.55, R) >droSec1.super_22 942484 111 - 1066717 CUAGAAGCGAGCAUAAAGUACGAAAUCCAAUAACGCUCAAUGGCAAACGGGCAAGAGCAACAGCAACUACUCAGAAGGAGCAUCUGAGUAGGAGCCUGAGUUGGAGGAGCA ......(((.((.....)).)....(((..(((((((....)))...(((((....((....))..(((((((((.......)))))))))..))))).))))..))))). ( -33.90, z-score = -2.92, R) >droSim1.chr3R 24029892 111 - 27517382 CUAGAAGCGAGCAUAAAGUACGCAAUCCAAUAACGCUCAAUGGCACACCGGCAAGAGCAACAGCAACUACUCAGAAGGAGCAUCUGAGUAGGAGCCUGAGUUGGAGGAGCA ......(((.((.....)).)))..(((..((((((((..(((....)))....))))..((((..(((((((((.......)))))))))..).))).))))..)))... ( -36.20, z-score = -3.07, R) >consensus CUAGAAGCGAGCAUAAAGUACGAAAUCCAAUAACGCUCAAUGGCAAACGGGCAAGAGCAACAGCAACUACUCAGAAGGAGCAUCUGAGUAGGAGCCUGAGUUGGAGGAGCA ......(((.((.....)).)....(((..((((((((....((......))..))))..((((..(((((((((.......)))))))))..).))).))))..))))). (-32.08 = -32.12 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:26 2011