| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,331,469 – 24,331,530 |
| Length | 61 |
| Max. P | 0.952491 |
| Location | 24,331,469 – 24,331,530 |
|---|---|
| Length | 61 |
| Sequences | 9 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 73.12 |
| Shannon entropy | 0.56485 |
| G+C content | 0.50081 |
| Mean single sequence MFE | -14.93 |
| Consensus MFE | -12.41 |
| Energy contribution | -11.94 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.952491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24331469 61 - 27905053 UUGGCAUUGGGUUGCAUUAGCCUAAGUGCGUUACUCAACGCCUGUCACCCGAGUUCUCGUC ..(((.((((((((((((......))))))..)))))).))).......(((....))).. ( -17.10, z-score = -1.32, R) >droPer1.super_0 10285944 61 - 11822988 AUGGUGUUGGGUUGCAUUAGCCUAAGUGUGUUAUACAAUGCCUGUCACUGGUGUCGUCGUC ..(((((((...((((((......)))))).....))))))).(.((....)).)...... ( -10.70, z-score = 1.13, R) >droSim1.chr3R 24021307 61 - 27517382 UUGGCAUUGGGUUGCAUUAGCCUAAGUGCGUUACUCAACGCCUGUCACCCGAGUUCUCGUC ..(((.((((((((((((......))))))..)))))).))).......(((....))).. ( -17.10, z-score = -1.32, R) >droSec1.super_22 934593 61 - 1066717 UUGGCAUUGGGUUGCAUUAGCCUAAGUGCGUUACUCAACGCCUGUCACCCGAGUUCUCGUC ..(((.((((((((((((......))))))..)))))).))).......(((....))).. ( -17.10, z-score = -1.32, R) >droYak2.chr3R 6665848 61 + 28832112 UUGGCAUUGGGUUGCAUUAGCCUAAGUGCGUUACUCAACGCCUGUCACCCGAGUUCUCGUC ..(((.((((((((((((......))))))..)))))).))).......(((....))).. ( -17.10, z-score = -1.32, R) >droEre2.scaffold_4820 6763269 61 + 10470090 UUGGCAUUGGGUUGCAUUAGCCUAAGUGCGUUACUCAACGCCUGUCACCCGAGUUCUCGUC ..(((.((((((((((((......))))))..)))))).))).......(((....))).. ( -17.10, z-score = -1.32, R) >droVir3.scaffold_12822 3771803 56 - 4096053 GCGGUGUUGAAUUGCAUUAGCCUGAGUGUGUUAUUCAAUGCCAACAGAUUCUGACU----- ..((((((((((.((((..........)))).))))))))))..(((...)))...----- ( -15.00, z-score = -1.59, R) >anoGam1.chr2R 7592995 51 - 62725911 GUGGAA-UGGGGUGCAAAAGCAU--GUGCGGUUUUCAUUAGUCG-AGCUCUCCUC------ ......-.((((.((....((..--..))(..(......)..).-.)).))))..------ ( -10.10, z-score = 0.41, R) >droWil1.scaffold_181089 9007886 51 - 12369635 UUGGUGUUGGGUUGCAUUAGCCUAAGUGUGUUAUUCAAUGCCUGUCGCCUG---------- ..((((((((((.((((..........)))).)))))))))).........---------- ( -13.10, z-score = -1.31, R) >consensus UUGGCAUUGGGUUGCAUUAGCCUAAGUGCGUUACUCAACGCCUGUCACCCGAGUUCUCGUC ..(((.((((((.(((((......)))))...)))))).)))................... (-12.41 = -11.94 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:24 2011