| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,324,030 – 24,324,125 |
| Length | 95 |
| Max. P | 0.976844 |
| Location | 24,324,030 – 24,324,125 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 83.57 |
| Shannon entropy | 0.31589 |
| G+C content | 0.37752 |
| Mean single sequence MFE | -23.34 |
| Consensus MFE | -14.17 |
| Energy contribution | -14.56 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24324030 95 + 27905053 UACUUUUGAACAGUGAACUCACUGUGAAAGGCGUCUUAUGAUGCCACUUUUACGCUCAAGCAUGUCGGGCUAUUCGAAUAACUCAAAAGAAAAUC- ..(((((((((((((....))))))(((.((((((....))))))........((((.........))))..))).......)))))))......- ( -29.20, z-score = -4.18, R) >droAna3.scaffold_13340 17127662 81 + 23697760 UUCUUUAGAACUGUGAACUCACUGUGAA-------UCGAAAGGCCUCUU---CACUAAAGCAUUUUAGGCCAUUC-----AUCCAAAAAGUAAUCA ..((((...((.(((....))).))...-------..(((.(((((...---..............))))).)))-----......))))...... ( -12.83, z-score = -0.45, R) >droEre2.scaffold_4820 6755854 95 - 10470090 UACUUUUGAACAGUGAACUCACUGUUAAAGGCGUCUUAUGAUGCCACUUUUACGCUCAAGCAUGUCGGACUAUUUGAAUAACUCAAAAGAAAAUC- ..(((((((.(((((....)))))(((((((((((....))))))........((....))...........))))).....)))))))......- ( -25.10, z-score = -3.49, R) >droYak2.chr3R 6658329 95 - 28832112 UACUUUUGAACAGUGAACUCACUGUGAAAGGCGUCUUAUGAUGCCACUUUCACGCUCAAGCAUGUCGGACUAGUUGAAUAACUCAAAAGAAAAUC- ..(((((((((((((....))))))....((((((....)))))).((..((.((....)).))..))..............)))))))......- ( -27.30, z-score = -3.23, R) >droSec1.super_22 927100 95 + 1066717 UACUUUUGAACAGUGAACUCACUGUGAAAAGCGUCUUAUGAUGCCACUUUUACGCUCAAGCAUGUCGGGCUAUUCAAAUAACUUAAAAGAAAAUA- ..(((((((((((((....))))))(((..(((((....))))).........((((.........))))..))).......)))))))......- ( -22.80, z-score = -2.75, R) >droSim1.chr3R_random 1167256 95 + 1307089 UACUUUUGAACAGUGAACUCACUGUGAAAAGCGUCUUAUGAUGCCACUUUUACGCUCAAGCAUGUCGGGCUAUUCAAAUAACUUAAAAGAAAAUC- ..(((((((((((((....))))))(((..(((((....))))).........((((.........))))..))).......)))))))......- ( -22.80, z-score = -2.73, R) >consensus UACUUUUGAACAGUGAACUCACUGUGAAAGGCGUCUUAUGAUGCCACUUUUACGCUCAAGCAUGUCGGGCUAUUCGAAUAACUCAAAAGAAAAUC_ ..(((((((((((((....)))))).......((((.((.((((...............)))))).))))............)))))))....... (-14.17 = -14.56 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:21 2011