| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,317,845 – 24,317,965 |
| Length | 120 |
| Max. P | 0.890745 |
| Location | 24,317,845 – 24,317,965 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.59 |
| Shannon entropy | 0.44555 |
| G+C content | 0.39917 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -13.84 |
| Energy contribution | -14.84 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24317845 120 - 27905053 GAAAAUUAAGCACUGUAAGGUUUCGGUUCCGAAAGGAACACGCCUCUUGAGCGAACCACUAGUUCCAAGCCGAAAUCAAAUUUCCAGUUUUAGCGUUGCCACUUUUUUAAAAUGCAUAAU ......((((.((((.((((((((((((((....))))).((((....).))).................)))))))....)).))))))))(((((.............)))))..... ( -26.42, z-score = -1.29, R) >droSim1.chr3R 24009703 93 - 27517382 GAAAAUUAAGCAC--UAAUGUUUCGGUUCCGAAAGGAACACG-CUCUUGAGCGAACCACUAGUUCCAAACCGAAAUCAAAGUUCCAG--UUAGCGUUG---------------------- ........(((.(--(((((((((((((((....))))).((-((....)))).................))))))..........)--)))).))).---------------------- ( -24.00, z-score = -2.65, R) >droSec1.super_22 920904 117 - 1066717 GAAAAUUAAGCAC--UAAUGUUUCGAUUCCGAAAGGAACACG-CUCUUGAGCGAACCACUAGUUCCAAACCGAAAUUAAAGUUCCAGUUUUAGCGUUGCCACGCUUAUAAAAUGUAUGAU ....((((.((((--(...((((((.((((....))))..((-((....)))).................))))))...)))....((((((((((....)))))...))))))).)))) ( -24.00, z-score = -1.59, R) >droYak2.chr3R 6652077 118 + 28832112 -AAAACUAAUCACUACACGGUUUCGGUUCCGAAAGGAACAAG-CUCUAUUGCGAACCACUAGUUCCAAAACCAAAAUUAAGUUUCAGCUUUAGCGUUGCCACUUUUCUCAAGUGUAUCAU -............((((((((((.((((((....)))))..(-(......))((((.....))))).)))))......((((..((((......))))..)))).......))))).... ( -28.40, z-score = -3.50, R) >droEre2.scaffold_4820 6749628 115 + 10470090 GAAACUUAAUCACUAAGCGGUUCCGGGUCCGAAAGGAACAAA-CUCUGUAGCGAACCACUAGUUCCAAAAC----AAUAACUUUCAGCUUUAGCGUUGCCAUAUUUAUCAAAUGUAUCAU ((.((......((((.(.((((((...(((....)))(((..-...))).).))))).)))))........----.........((((......))))...............)).)).. ( -18.20, z-score = 0.04, R) >consensus GAAAAUUAAGCACU_UAAGGUUUCGGUUCCGAAAGGAACACG_CUCUUGAGCGAACCACUAGUUCCAAACCGAAAUCAAAGUUCCAGCUUUAGCGUUGCCACUUUUAUAAAAUGUAUCAU ..................(((..(((((((....)))))...........(.((((.....)))))...........................))..))).................... (-13.84 = -14.84 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:20 2011