| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,286,779 – 24,286,897 |
| Length | 118 |
| Max. P | 0.552479 |
| Location | 24,286,779 – 24,286,897 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 88.23 |
| Shannon entropy | 0.22568 |
| G+C content | 0.42776 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -22.36 |
| Energy contribution | -22.87 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24286779 118 + 27905053 GUAAAUGACAUAUAAGCCCCGACCCAGGCUUAUGUGCUUAGGGCGCCUUGAGUUAAUGCGUUGAUGUGAUGAUAUCAUUAUCAAAAUAUCCUGGUCUGUACCGCAGUAUCUCCGCUUC .....(((((((((((((........)))))))))).)))(((((....(((....(((...(((((..(((((....)))))..)))))..(((....))))))....)))))))). ( -33.20, z-score = -2.08, R) >droSim1.chr3R 23975415 115 + 27517382 GUAAAUGACAUAUAAGCCCCGACCCAGGCUUAUGUGCUUAGGGCGCCUUGAGUUAAUGCGUUGAUAUGAUGAUAUCAUUAUCAAAAUAUCCUGGUC-GUACCGCAGUAUCUCCGCU-- ((...(((((((((((((........)))))))))).)))..))((...(((....(((...(((((..(((((....)))))..)))))..((..-...)))))....))).)).-- ( -32.50, z-score = -1.97, R) >droSec1.super_22 890133 116 + 1066717 GUAAAUGACAUAUAAGCCCCGACCCAGGCUUAUGUGCUUAGGGCGCCUUGAGUUAAUGCGUUGAUAUGAUGAUAUCAUUAUCAAAAUAUCCUGGUCCGUACCGCAGUAUCUCCGCU-- ((...(((((((((((((........)))))))))).)))..))((...(((....(((...(((((..(((((....)))))..)))))..(((....))))))....))).)).-- ( -32.80, z-score = -2.04, R) >droYak2.chr3R 6620477 116 - 28832112 GUAAAUGACAUAUAAGCCCCAACCCAGGCUUAUGUGCUUAGAGCGCCUUGAAUUAAUGCGUUGAUAUGAUGAUAUCAUUAUCAAAAUAUCCUGGUUUGUAUCGUAGUACCUACGCU-- .(((((..((((((((((........))))))))))..((((((((.(((...))).)))))(((((..(((((....)))))..)))))))))))))...(((((...)))))..-- ( -28.10, z-score = -2.16, R) >droEre2.scaffold_4820 6718114 116 - 10470090 GUAAAUGACAUAUAAGCCCCAACCCAGGCUUAAGUGCUUAGAGCGCCUUGGGUUAAUGCGUUGAUAUGAUGAUAUCAUUAUCAAAAUAGCCUGGUCCCUACCGUAGUAUCUCCGCU-- ....................((((((((.....((((.....))))))))))))...(((..(((((..(((((....))))).........(((....)))...)))))..))).-- ( -28.00, z-score = -0.99, R) >droAna3.scaffold_13340 17086190 103 + 23697760 GUAAAUGACAUAUAAGCCCGA--CCAGGCUUAAGUGCUUAGGGCGCCUUGAGUUAAUGCGUUGAU---AUGAUAUCAUUAUCAAAAUAUCCUGUCCUUUAUCUGUGCU---------- (((((.((((..((((((...--...))))))...(((((((....)))))))..(((..(((((---(((....)).))))))..)))..)))).))))).......---------- ( -23.20, z-score = -0.81, R) >consensus GUAAAUGACAUAUAAGCCCCAACCCAGGCUUAUGUGCUUAGGGCGCCUUGAGUUAAUGCGUUGAUAUGAUGAUAUCAUUAUCAAAAUAUCCUGGUCUGUACCGCAGUAUCUCCGCU__ ........((((((((((........))))))))))..((((((((.(((...))).)))))(((((..(((((....)))))..))))))))......................... (-22.36 = -22.87 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:14 2011