| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,272,965 – 24,273,066 |
| Length | 101 |
| Max. P | 0.617532 |
| Location | 24,272,965 – 24,273,066 |
|---|---|
| Length | 101 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 77.50 |
| Shannon entropy | 0.44472 |
| G+C content | 0.35180 |
| Mean single sequence MFE | -24.37 |
| Consensus MFE | -18.08 |
| Energy contribution | -18.19 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24272965 101 - 27905053 -------------UGUACAUAUAGUAUAUAUCAUGUAUAUGCAAUUUAGGGCGUGGCCACACUUUGAUUGUCUUCAUUUAGUUAGGUUUUAUGCUGAUUUACUUAGGCCACAGA--- -------------((((((((((.....))).))))))).((........))((((((......(((......)))...((((((........))))))......))))))...--- ( -21.60, z-score = -0.32, R) >droSim1.chr3R 23960806 107 - 27517382 ------UGUACAU-GUAUAUAUAGUAUAUAUCAUGUAUAUGCAAUUUAGGGCGUGGCCACACUUUGAUUAUCUUCAUUUAGUUAGGUUUUAUGCUGAUUUACUUAGGCCACAGA--- ------(((((((-(((((((...)))))).)))))))).((........))((((((......(((......)))...((((((........))))))......))))))...--- ( -26.60, z-score = -1.64, R) >droSec1.super_22 876427 109 - 1066717 ----UGUACAUAU-AUAUAUAUAGUAUAUAUCAUGUAUAUGCAAUUUAGGGCGUGGCCACACUUUGAUUGUCUUCAUUUAGUUUGGUUUUAUGCUGAUUUACUUAGGCCACAGA--- ----(((((((((-((((((...)))))))).))))))).((........))((((((..(((.(((......)))...)))(..((.....))..)........))))))...--- ( -26.80, z-score = -1.55, R) >droEre2.scaffold_4820 6703593 114 + 10470090 UAUAUAUACACAUAAUAUAUAUACUAUAUAUCGUGUAUAUGCAAUUUGGGGCGUGGCCACACUUUGAUUGUCUUCAUUUAGUUAGGUUUUAUGCUGAUUUACUUAGGCCACAGA--- ..(((((((((...(((((((...))))))).)))))))))...........((((((......(((......)))...((((((........))))))......))))))...--- ( -26.30, z-score = -1.33, R) >droAna3.scaffold_13340 17072868 108 - 23697760 ------UGUACAUUUCUCCUUAAACGUGUAACAUACAUGUGCAAUUCGAGGCGUGGCCACACUUUGAUUGUCUUCAUUUAGUUAAGUUUUAUGCUGAUUUACUUAGGCCACAGA--- ------........((((.....(((((((...))))))).......)))).((((((..(((.(((......)))...)))(((((.............)))))))))))...--- ( -23.62, z-score = -0.83, R) >dp4.chr2 20534423 110 + 30794189 ----UAUAUAUGAGAGUAUGAGAGCGUGUAUAUAUUAUAUGCAAUUCGAGGCGUGGCCACACUUUGAUUGUCUUCAUUUAGCUGGAUUUUAUGCUGAUUUACUUAGGCCACAGA--- ----..(((((....)))))...(((((((.....)))))))..........((((((......(((......))).(((((..........)))))........))))))...--- ( -28.10, z-score = -1.29, R) >droPer1.super_0 10221786 110 - 11822988 ----UAUAUAUGAGAGUAUGAGAGCGUGUAUAUAUUAUAUGCAGUUCGAGGCGUAGCCACACUUUGAUUGUCUUCAUUUAGCUGGAUUUUAUGCUGAUUUACUUAGGCCACAGA--- ----..(((((....))))).((((.(((((((...))))))))))).....((.(((......(((......))).(((((..........)))))........))).))...--- ( -22.90, z-score = 0.46, R) >droWil1.scaffold_181089 8943555 100 - 12369635 -----------------UGUAUAGACAGACAUAUGUACAAACAAUUCAAGGCGUGGCCACAUUUUGAUUGUCUUCAUUUAGUUAGGUUUUAUGCUGAUUUACUUAGGCCACAGGACA -----------------((((((..........)))))).............((((((......(((......)))...((((((........))))))......))))))...... ( -19.00, z-score = -0.09, R) >consensus ______UAUACAU_AUAUAUAUAGUAUAUAUCAUGUAUAUGCAAUUCAAGGCGUGGCCACACUUUGAUUGUCUUCAUUUAGUUAGGUUUUAUGCUGAUUUACUUAGGCCACAGA___ .......................(((((((.....)))))))..........((((((......(((......))).(((((..........)))))........))))))...... (-18.08 = -18.19 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:11 2011