| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,264,195 – 24,264,297 |
| Length | 102 |
| Max. P | 0.599612 |
| Location | 24,264,195 – 24,264,297 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.10 |
| Shannon entropy | 0.33212 |
| G+C content | 0.32374 |
| Mean single sequence MFE | -20.47 |
| Consensus MFE | -13.56 |
| Energy contribution | -13.57 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24264195 102 + 27905053 ---------GGUCUACACC-AAUGUCCG-----CCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAACACACUUUUUAAUUCCUUUUAGUCUUCGU--- ---------((...(((((-(.((((..-----..))))...))))))(((((((..(((.....(((((((....)))))))..)))..))))))).....)).............--- ( -19.60, z-score = -2.07, R) >droAna3.scaffold_13340 17064055 99 + 23697760 ---------GGUCUACACC-GAUGUCCG-----CCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUUUAAUUCCUUUUGGCUGU------ ---------((((.(((((-(.((((..-----..))))...))))))(((((((.....((...(((((((....)))))))..))...)))))))...........))))..------ ( -21.20, z-score = -1.78, R) >droEre2.scaffold_4820 6694505 102 - 10470090 ---------GGUCUACGCC-AAUGUCCG-----CCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUUUAAUUCCUUUUAGUCUUCUU--- ---------((...(((((-(.((((..-----..))))...))))))(((((((.....((...(((((((....)))))))..))...))))))).....)).............--- ( -19.20, z-score = -1.83, R) >droYak2.chr3R 6597487 102 - 28832112 ---------GGUCUACACC-AAUGUCCG-----CCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUUUAAUUCCUUUUAGUCUUCUU--- ---------((...(((((-(.((((..-----..))))...))))))(((((((.....((...(((((((....)))))))..))...))))))).....)).............--- ( -19.60, z-score = -2.15, R) >droSec1.super_22 867733 102 + 1066717 ---------GGUCUACACC-AAUGUCCG-----CCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUUUAAUUCCUUUUAGUCUUAGU--- ---------((...(((((-(.((((..-----..))))...))))))(((((((.....((...(((((((....)))))))..))...))))))).....)).............--- ( -19.60, z-score = -1.87, R) >droSim1.chr3R 23951956 101 + 27517382 ---------GGUCUACACC-AAUGUCCG-----CCGACAAAAUGGUGUGAAAGUGAUUAAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUU-AAUUCCUUUUAGUCUUCGU--- ---------(((..(((..-..)))..)-----))(((.(((.((..((((((((.....((...(((((((....)))))))..))...)))))))-)...)).))).))).....--- ( -21.60, z-score = -2.69, R) >droWil1.scaffold_181089 8933353 96 + 12369635 ------------------G-GUUCGCCG-----CCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUUUAAUUCUUUUUGCUCUCUGUGUG ------------------(-((.....)-----))(((((((.((((((.(((((((((((.(((......))).)))))))))))..))))))..........))))).))........ ( -17.20, z-score = -0.97, R) >dp4.chr2 20525627 108 - 30794189 ---------GGUCUACGCCCAAUGUCCCGGACUCCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUUUAAUUCCUUUUUAGCUCUCU--- ---------.......((....((((..((...))))))(((.((((((.(((((((((((.(((......))).)))))))))))..)))))).)))............)).....--- ( -17.70, z-score = -0.65, R) >droPer1.super_0 10212986 108 + 11822988 ---------GGUCUACGCCCAAUGUCCCGGACUCCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUUUAAUUCCUUUUUAGCUCUCU--- ---------.......((....((((..((...))))))(((.((((((.(((((((((((.(((......))).)))))))))))..)))))).)))............)).....--- ( -17.70, z-score = -0.65, R) >droVir3.scaffold_12822 3700028 111 + 4096053 AGGUUGGGCUGUGUGUGUC-GAUGGCGG-----CCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUUUAAUUCCUUUUGG-CUCUGUU-- .....(((((.....((((-(.......-----.)))))(((.((((((.(((((((((((.(((......))).)))))))))))..)))))).)))..........))-)))....-- ( -25.90, z-score = -1.09, R) >droMoj3.scaffold_6540 17010862 103 + 34148556 --------AGGACCAUGUC-GACGGAGA-----CCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGUAUACUUUUUAAUUCCUUUUGG-CUCUGUU-- --------((..(((((((-(..(....-----))))))(((.((((((.(((((((((((.(((......))).)))))))))))..)))))).))).........)))-..))...-- ( -22.20, z-score = -1.60, R) >droGri2.scaffold_14906 1301683 103 + 14172833 --------UAGGCACUUUU-GGCGGCCG-----CCAACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUUUAAUUCCUUUUGG-CUCUGUU-- --------(((((....((-(((....)-----))))(((((.((...(((((((.....((...(((((((....)))))))..))...))))))).....))))))))-).)))..-- ( -24.10, z-score = -1.80, R) >consensus _________GGUCUACACC_AAUGUCCG_____CCGACAAAAUGGUGUGAAAGUGAUUUAUAUUUUAAUUCAAAAAUGAAUUAUUUAGCACACUUUUUAAUUCCUUUUAGUCUCUGU___ .......................................(((.((((((.(((((((((((.(((......))).)))))))))))..)))))).)))...................... (-13.56 = -13.57 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:05 2011