| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,252,524 – 24,252,617 |
| Length | 93 |
| Max. P | 0.828744 |
| Location | 24,252,524 – 24,252,617 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.54 |
| Shannon entropy | 0.20074 |
| G+C content | 0.44030 |
| Mean single sequence MFE | -26.47 |
| Consensus MFE | -21.90 |
| Energy contribution | -22.82 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24252524 93 + 27905053 AUGGGUGCUGUGUUAAAAAACGAUAUCCGAUUCGCUGGCAGGCGUUUUUAGAAACGCCAUUAGUGCCUG--ACUGGAGCUAUUAAAAGCGAAAAG .((((((.(((........))).)))))).((((((....(((((((....)))))))..((((.((..--...)).)))).....))))))... ( -29.30, z-score = -2.57, R) >droSim1.chr3R 23940299 93 + 27517382 AUGGGUGCUGCGUUAAAAAACGAUAUCCGAUUCGCUCGCAGGCGUUUUUAGAAACGCCAUUAGUGCCUG--ACUGGAGCUAUUAAAAGUGAAAAG .((((((...((((....)))).)))))).((((((....(((((((....)))))))..((((.((..--...)).)))).....))))))... ( -27.20, z-score = -1.89, R) >droSec1.super_22 856237 93 + 1066717 AUGGGUGCUGCGUUAAAAAACGAUAUCCGAUUCGCUCGCAGGCGUUUUUAGAAACGCCAUUAGUGCCUG--ACUGGAGCUAUUAAAAGUGAAAAG .((((((...((((....)))).)))))).((((((....(((((((....)))))))..((((.((..--...)).)))).....))))))... ( -27.20, z-score = -1.89, R) >droYak2.chr3R 6585475 93 - 28832112 AUGGGUGCUGCGUUAAAAAACGAUAUCCGAUUCGCUCGCAGGCGUUUUUAGAAACGCCAUUAGUGCCUG--ACUGGAGCUAUUAAAAGUGAAAAG .((((((...((((....)))).)))))).((((((....(((((((....)))))))..((((.((..--...)).)))).....))))))... ( -27.20, z-score = -1.89, R) >droEre2.scaffold_4820 6680981 93 - 10470090 AUGGGUGCUGCGUUAAAAAACGAUAUCCGAUUCGCUUGCAGGCGUUUUUUGAAACGCCAUUAGUGCCUG--ACUGGAGCUAUUAAAAGUGAAAAG .((((((...((((....)))).)))))).(((((((...(((((((....)))))))..((((.((..--...)).))))....)))))))... ( -28.70, z-score = -2.58, R) >droAna3.scaffold_13340 17052381 87 + 23697760 --------UGCGUUAAAAAACGAUAUCCGAUCCGUGCCGAGCGGUUUUUAGCAACGCCAUUAGUGAUUGUUGCCGAAGCUAUUAAAAGCGGAAAG --------..((((....))))........(((((....((..((((((((((((((.....))).))))))..)))))..))....)))))... ( -19.20, z-score = -0.04, R) >consensus AUGGGUGCUGCGUUAAAAAACGAUAUCCGAUUCGCUCGCAGGCGUUUUUAGAAACGCCAUUAGUGCCUG__ACUGGAGCUAUUAAAAGUGAAAAG .((((((...((((....)))).)))))).((((((....(((((((....)))))))..((((.((.......)).)))).....))))))... (-21.90 = -22.82 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:03 2011