| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,246,932 – 24,247,018 |
| Length | 86 |
| Max. P | 0.762017 |
| Location | 24,246,932 – 24,247,018 |
|---|---|
| Length | 86 |
| Sequences | 7 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 71.33 |
| Shannon entropy | 0.55907 |
| G+C content | 0.37039 |
| Mean single sequence MFE | -15.67 |
| Consensus MFE | -9.84 |
| Energy contribution | -9.97 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24246932 86 + 27905053 UUACAUUUUUCUUUGCAUCCUUAAAUUUACUACAUUAUUUCAACUCCGUUUUGCUGAUUUCCGAGUCCUUUGGGAAGGGUGCAGGA---- ...........(((((((((...................(((.(........).)))((((((((...))))))))))))))))).---- ( -16.90, z-score = -0.90, R) >dp4.chr2 20507021 79 - 30794189 ---------UACAUUCAGACAAAGAUUAGCAA-ACGGACAAGGUUCUACUGUAAU-AUAUCCUAGCACCUUAAAAACGGAAAAUGCUCGG ---------..................((((.-.((...(((((.(((..(((..-.)))..))).))))).....)).....))))... ( -8.70, z-score = 0.41, R) >droAna3.scaffold_13340 17046606 80 + 23697760 ------AUAUAUAUUCAAUCUUUAAUUUGUAUCCUUUCUUCGGUUUUGUUUUGCUGAUUUCCAAGUCCUUUCUGAGGAGCGGAAAA---- ------.........................(((.((((((((......((((........))))......)))))))).)))...---- ( -13.50, z-score = -0.80, R) >droEre2.scaffold_4820 6675191 85 - 10470090 UUACAUUUUUCUUUGCAUCCUUAAAUUUACUUCAUUAUUUCAACUCCGUUUUGCUGAUUUCCGAGUCCUUUGGGAAGGGUGCAGA----- ...........(((((((((...................(((.(........).)))((((((((...)))))))))))))))))----- ( -16.90, z-score = -1.29, R) >droYak2.chr3R 6579643 86 - 28832112 UUACAUUUUUCUUUGCAUCCUUAAAUUUACUUCAUUAUUUCGACUCCGUUUUGCUGAUUUCCGAGUCCUUUGGGAAGGGUGCAGGA---- ...........(((((((((...........(((.((...((....))...)).)))((((((((...))))))))))))))))).---- ( -17.90, z-score = -0.93, R) >droSec1.super_22 850405 86 + 1066717 UUACAUUUUUCUUUGCAUCCUUAAAUUUACUUCAUUAUUUCGACUCCGUUUUGCUGAUUUCCGAGUCCUUUGGGAAGGGUGCAGGA---- ...........(((((((((...........(((.((...((....))...)).)))((((((((...))))))))))))))))).---- ( -17.90, z-score = -0.93, R) >droSim1.chr3R 23934476 86 + 27517382 UUACAUUUUUCUUUGCAUCCUUAAAUUUACUUCAUUAUUUCGACUCCGUUUUGCUGAUUUCCGAGUCCUUUGGGAAGGGUGCAGGA---- ...........(((((((((...........(((.((...((....))...)).)))((((((((...))))))))))))))))).---- ( -17.90, z-score = -0.93, R) >consensus UUACAUUUUUCUUUGCAUCCUUAAAUUUACUUCAUUAUUUCGACUCCGUUUUGCUGAUUUCCGAGUCCUUUGGGAAGGGUGCAGGA____ ...........(((((((((...................(((.(........).)))((((((((...)))))))))))))))))..... ( -9.84 = -9.97 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:01 2011