| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,229,568 – 24,229,660 |
| Length | 92 |
| Max. P | 0.736035 |
| Location | 24,229,568 – 24,229,660 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 72.10 |
| Shannon entropy | 0.45454 |
| G+C content | 0.39433 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -14.35 |
| Energy contribution | -14.60 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24229568 92 + 27905053 UGUCCAUUUUUUCUAUAUAUAUAUAUAUAUAUGUUUUGCC-AGGACUCGGCAUUAUACAAGUGCAAUUUGCAGCUGCCGCUGCGGGCGAAUUU .((((........((((((((....)))))))).......-.))))((((((((.....)))))..((((((((....))))))))))).... ( -23.99, z-score = -1.26, R) >droSec1.super_22 832902 89 + 1066717 UGUCCAUUUUUUUC---UAUAUAUAUAUAUGUGUUUUGCC-AGGACUCGGCAUUAUACAAGUGCAAUUUGCAGCUGCCGCUGCUGGCGAAUUU .(.(((........---........(((.(((((..((((-.......))))..))))).)))......(((((....)))))))))...... ( -21.60, z-score = -0.61, R) >droEre2.scaffold_4820 6657493 93 - 10470090 UGUCCAUUUUUCCUAUAUAUAUAUGUUUUUUUUUUUCGCCCAGGACUCGGCAUUAUACAAGUGCAAUUUGCAGCUGCCGCUGCUGGCGAAUUU ..................................((((((.........(((((.....))))).....(((((....))))).))))))... ( -21.00, z-score = -0.98, R) >droAna3.scaffold_13340 17030053 69 + 23697760 -------------------UCUUUUUUCUUAUAUUUUGU-----ACUAGCUAUUACACAACUGCAAUUUGCAGUUCCCGCUGCAGGCGCACUC -------------------.................((.-----.((.((........((((((.....))))))......)).))..))... ( -11.64, z-score = -0.95, R) >consensus UGUCCAUUUUUUCU___UAUAUAUAUAUAUAUGUUUUGCC_AGGACUCGGCAUUAUACAAGUGCAAUUUGCAGCUGCCGCUGCUGGCGAAUUU ..................................((((((.........(((((.....))))).....(((((....))))).))))))... (-14.35 = -14.60 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:59 2011