| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,218,449 – 24,218,540 |
| Length | 91 |
| Max. P | 0.606448 |
| Location | 24,218,449 – 24,218,540 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 72.37 |
| Shannon entropy | 0.56053 |
| G+C content | 0.34110 |
| Mean single sequence MFE | -20.14 |
| Consensus MFE | -8.54 |
| Energy contribution | -8.79 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24218449 91 + 27905053 AGAAUUUGUUUGGCUUGUUGUUUUU--GCCGUUUUGCUAAUUUCUCGGCAUAAUUAUGGCAAUUGCCGUAAAACGUUGGGUACAUAUAAAUUG ..(((((((.((((((..((((..(--((((..............)))))...(((((((....)))))))))))..)))).)).))))))). ( -22.74, z-score = -1.94, R) >droVir3.scaffold_12822 3638026 92 + 4096053 AUAAUUUAGCCGGCUGAUUGGACAAACGUUAUUU-AGGAAUUUGGUUUUGUAAUUGUCGAAAACGGUUUAACUGGACCGGUAAAAAUAAAUUA .((((((((((((((((...(((....)))..))-))...((..(((....((((((.....)))))).)))..))))))).....))))))) ( -18.30, z-score = -0.82, R) >droMoj3.scaffold_6540 16953423 91 + 34148556 AUAAUUUAUUCGGCUGGUUAGUUAU-UGUUAUUU-GGCAAUUGAGUUUUGUAAUUGCAGUAAACGGCUUAACUGGACACGUGAAAAUAAAUUU ..((((((((..((((..((((((.-.((..(((-((((((((.......)))))))..))))..)).))))))..)).))...)))))))). ( -17.20, z-score = -0.77, R) >droAna3.scaffold_13340 17018464 74 + 23697760 ----------UGGCCUGUUGUU--------GUUU-GCUAAUUUCUCAGCAUAAUUACGGCAAUUGCCGUAAAAUGUUGGGUACAUAUAAAUUG ----------((((........--------....-))))....((((((((..(((((((....))))))).))))))))............. ( -19.40, z-score = -2.00, R) >droEre2.scaffold_4820 6646052 90 - 10470090 AGAGGUUGUUUGGCUUGUUGUUUUU--GCAGUUU-GCUAAUUUCUCGGCAUAAUUAUGGCAAUUGCCGUAAAAUGUUGGGUACAUAUAAAUUG .........(((((..(((((....--)))))..-)))))...((((((((..(((((((....))))))).))))))))............. ( -22.40, z-score = -1.72, R) >droYak2.chr3R 6550079 87 - 28832112 GGAA---GUUUGGUUUGUUGUUUUU--GCCGUUU-GCUAAUUUCUCGGCAUAAUUAUGGCAAUUGCCGUAAAAUGUUGGGUACAUAUAAAUUG ...(---((.((((..(.....)..--))))...-))).....((((((((..(((((((....))))))).))))))))............. ( -19.90, z-score = -1.27, R) >droSec1.super_22 821836 90 + 1066717 AGAAUUUGUUUGGUUUGUUGUUUUU--GCCGUUU-GCUAAUUUCUCGGCAUAAUUAUGGCAAUUGCCGUAAAAUGUUGGGUACAUAUAAAUUG ..((((((((((((..(..((....--))..)..-)))))...((((((((..(((((((....))))))).)))))))).....))))))). ( -20.60, z-score = -1.59, R) >droSim1.chr3R 23905342 90 + 27517382 AGAAUUUGUUUGGUUUGUUGUUUUU--GCCGUUU-GCUAAUUUCUCGGCAUAAUUAUGGCAAUUGCCGUAAAAUGUUGGGUACAUAUAAAUUG ..((((((((((((..(..((....--))..)..-)))))...((((((((..(((((((....))))))).)))))))).....))))))). ( -20.60, z-score = -1.59, R) >consensus AGAAUUUGUUUGGCUUGUUGUUUUU__GCCGUUU_GCUAAUUUCUCGGCAUAAUUAUGGCAAUUGCCGUAAAAUGUUGGGUACAUAUAAAUUG ...........................................((((((....(((((((....)))))))...))))))............. ( -8.54 = -8.79 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:55 2011