| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,213,245 – 24,213,301 |
| Length | 56 |
| Max. P | 0.738867 |
| Location | 24,213,245 – 24,213,301 |
|---|---|
| Length | 56 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 86.44 |
| Shannon entropy | 0.18677 |
| G+C content | 0.43130 |
| Mean single sequence MFE | -9.37 |
| Consensus MFE | -8.79 |
| Energy contribution | -8.13 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24213245 56 - 27905053 AACUACGUGCUGGGAAUUCUAGUCCCUAAUUCGGCGUCUCCUAAUGUCAAUCUUCU--- ...........((((.......))))......(((((......)))))........--- ( -8.20, z-score = -0.52, R) >droSim1.chr3R 23900074 59 - 27517382 CAAUACGUGCUGGGAAUCCUAGUCCCCAAUUUGGCGUCUCUUAAUGUCAAUCUUCUUCU ......(..(((((...)))))..).....(((((((......)))))))......... ( -10.70, z-score = -1.51, R) >droSec1.super_22 816608 59 - 1066717 CAAUACGUACUGGGAAUCCUAGUCCCCAAUUCGACGUCUCUUAAUGUCAAUAUUCUUCU ......(.((((((...)))))).).......(((((......)))))........... ( -9.20, z-score = -1.36, R) >consensus CAAUACGUGCUGGGAAUCCUAGUCCCCAAUUCGGCGUCUCUUAAUGUCAAUCUUCUUCU ......(.((((((...)))))).).......(((((......)))))........... ( -8.79 = -8.13 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:52 2011