| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,212,192 – 24,212,294 |
| Length | 102 |
| Max. P | 0.724282 |
| Location | 24,212,192 – 24,212,294 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 88.96 |
| Shannon entropy | 0.21357 |
| G+C content | 0.51998 |
| Mean single sequence MFE | -33.62 |
| Consensus MFE | -23.78 |
| Energy contribution | -24.90 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24212192 102 - 27905053 CAUAUGCGUUGUAGCAACAAGACAAACA--GUGAAGAGCCGAGUCGAGUCAGUGAGGCAGCUGCCAGGAUUCAGGAUUCAGGAUCCUCCUUAGUUGCCGUCUCC ....(((......)))...((((...((--.(((.((......))...))).)).((((((((..(((((((........)))))))...)))))))))))).. ( -32.30, z-score = -1.95, R) >droAna3.scaffold_13340 17012937 96 - 23697760 CAUAUGCGUUGUAGCAACAAGACAAACA--AUGAGGAG-CGUCAGGCGGCAGUCUGAUGGCUUCUG-----CCUGCUGCCAGAUCCUCCUUAGUUGCCGUCUCC ....(((......)))...((((...((--((((((((-.(((.((((((((.(.((.....)).)-----.)))))))).))).))))))).)))..)))).. ( -36.20, z-score = -2.50, R) >droEre2.scaffold_4820 6639708 102 + 10470090 CAUAUGCGUUGUAGCAACAAGACAAACA--GUGAGGAGACGAGUCGAGUCAGUGAGGCAGCUGCCAGGAUUCAGGAUUCAGGAUCCUCCUUAGUUGCCGUCUCC ....(((......)))...((((...((--.(((...((....))...))).)).((((((((..(((((((........)))))))...)))))))))))).. ( -33.00, z-score = -1.82, R) >droYak2.chr3R 6543820 104 + 28832112 CAUAUGCGUUGUAGCAACAAGACAAACAUUGAGAGGAGACGAGUCGAGUCAGUGAGGCAGCUGCCAGGAUUCAGGAUUCAGGAUCCUCCUUAGUUGCCGUCUCC ....(((......)))...((((...((((((.....((....))...)))))).((((((((..(((((((........)))))))...)))))))))))).. ( -33.30, z-score = -1.84, R) >droSec1.super_22 815552 102 - 1066717 CAUAUGCGUUGUAGCAACAAGACAAACA--GUGAGUAGGCGAGUCGAGUCAGUGAGGCAGCUGCCAGGAUUCAGGAUUCAGGAUCCUCCUUAGUUGCCGUCUCC ....(((......)))...((((...((--.(((.(.((....)).).))).)).((((((((..(((((((........)))))))...)))))))))))).. ( -33.00, z-score = -1.95, R) >droSim1.chr3R 23899013 102 - 27517382 CAUAUGCGUUGUAGCAACAAGACAAACA--GUGAGUAGACGAGUCGAGUCAGUGAGGCAGCUGCCAGGAUUCAGGAUUCAGGAUCCUCCUUAGUUGCCGUCUCC ....(((......)))...((((...((--.(((.(.((....)).).))).)).((((((((..(((((((........)))))))...)))))))))))).. ( -33.90, z-score = -2.54, R) >consensus CAUAUGCGUUGUAGCAACAAGACAAACA__GUGAGGAGACGAGUCGAGUCAGUGAGGCAGCUGCCAGGAUUCAGGAUUCAGGAUCCUCCUUAGUUGCCGUCUCC ....(((......)))..................((((((...(((......)))((((((((..(((((((........)))))))...)))))))))))))) (-23.78 = -24.90 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:51 2011