| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,206,125 – 24,206,224 |
| Length | 99 |
| Max. P | 0.620708 |
| Location | 24,206,125 – 24,206,224 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 74.49 |
| Shannon entropy | 0.55748 |
| G+C content | 0.54353 |
| Mean single sequence MFE | -25.78 |
| Consensus MFE | -16.93 |
| Energy contribution | -17.35 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.51 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24206125 99 + 27905053 AGCAACGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGGCCACAGGACACGAACAGGAACACGG-CACCA-ACCUGGCACUCCAGCACCG--------- ......((((..(((((.......(((..(((((..((.((((....)))))).))).))..)))........((-.....-.)))))).)..))))....--------- ( -26.40, z-score = -0.31, R) >droSim1.chr3R 23892990 99 + 27517382 AGCAACGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGGCCACAGGACACGAACAGGAACACGG-CACCA-ACCAGGCACUCCAGCACCG--------- ......((((..((((........(((..(((((..((.((((....)))))).))).))..)))........((-.....-.)).))).)..))))....--------- ( -26.60, z-score = -0.54, R) >droSec1.super_22 809579 99 + 1066717 AGCAACGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGGCCACAGGACACGAACAGGAACACGG-CACCA-ACCAGGCACUCCAGCACCG--------- ......((((..((((........(((..(((((..((.((((....)))))).))).))..)))........((-.....-.)).))).)..))))....--------- ( -26.60, z-score = -0.54, R) >droYak2.chr3R 6536934 101 - 28832112 AGCAACGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGGCCACAGGACACGAACACGAACAGGAACACGGCACCAGGCACUCCAGCACCG--------- ......((((..((((.((((...(((..(((((..((.((((....)))))).))).))..))).....)))).....(....).))).)..))))....--------- ( -26.10, z-score = -0.40, R) >droEre2.scaffold_4820 6633681 101 - 10470090 AGCAACGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGGCCACAGGACACGAACAGGAACAGGAACACGGCACCAGGCACUCCAGCACCG--------- ......((((..((((........(((..(((((..((.((((....)))))).))).))..))).((....(.....)....)).))).)..))))....--------- ( -26.40, z-score = -0.13, R) >droAna3.scaffold_13340 17006714 107 + 23697760 ACCAACGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGGCCACAGGACACGAACAGGAACAGGAACACGGCACUAGACAC-CAGGCAACAAGCACCU-- ......(((((((.((.((((...(((..(((((..((.((((....)))))).))).))..))).....)))).....((.........)-).)))))).)))....-- ( -25.00, z-score = -0.23, R) >dp4.chr2 20466020 99 - 30794189 AGCCACGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGGCCACAGGACACGAACAGGAGAACGGACACGCUAAGGGACGAUGUCUCUC----------- .......((((.(((((.(((...(((((((...)))))))..))).)))))))))..........(((((.((..(.(.....))..))...))))).----------- ( -27.40, z-score = -0.51, R) >droPer1.super_0 10153552 99 + 11822988 AGCCACGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGGCCACAGGGCACGAACAGGAGAACGGACACGCUAAGGGACGAUGUCUCUC----------- .((((......)))).........(((..((((((.((.((((....)))))).))))))..))).(((((.((..(.(.....))..))...))))).----------- ( -31.60, z-score = -1.25, R) >droWil1.scaffold_181089 8862659 82 + 12369635 AACAACGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGGCCACAGGACACGAACAUGGACACGG-CGCUCUG--------------------------- .....((((((((((((.(((...(((((((...)))))))..))).))))))..(..((......))..)))))-)).....--------------------------- ( -24.80, z-score = -1.76, R) >droVir3.scaffold_12822 3624994 75 + 4096053 CAGUGCGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGCGCCGCAAAUGCCCACAGUACACGAACACGACUGCCA----------------------------------- ..(((..((((.(((...(((...((.((.....)).))....)))..))).))))..)))..............----------------------------------- ( -17.20, z-score = 0.50, R) >droMoj3.scaffold_6540 16940513 110 + 34148556 CACUGCGCUGCUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGCCCACAGUACAUGAACACGAGAACGGACUAGCGGACUAGCGGACUGCCUGGCAGCCGAGCA ....((.(((((((((.((((...(((((((..((.((.((.......)).)).))..))))))).))))...)).))))))).....(((.((((...))))))).)). ( -32.60, z-score = -0.37, R) >droGri2.scaffold_14906 1235993 94 + 14172833 CUUGGCGCUGUUCGCCACUCGAAACUUUAUGCCUUAUGAGCCGCAAAUGGCCGCAGGACAUGAACACGAAUACAUACUACCCACCUGCCUUCCU---------------- ..(((((.....))))).(((....(((((((((..((.((((....)))))).))).))))))..))).........................---------------- ( -18.70, z-score = -0.53, R) >consensus AGCAACGCUGUUGGCCACUUGAAAGUUUAUGCCUUAUGAGCCGCAAAUGGCCACAGGACACGAACAGGAACACGGACACGC_ACCAGGCACUCCAGCACC__________ .......(((.((((((.(((...(((((((...)))))))..))).)))))))))...................................................... (-16.93 = -17.35 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:47 2011