| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,203,746 – 24,203,863 |
| Length | 117 |
| Max. P | 0.519099 |
| Location | 24,203,746 – 24,203,863 |
|---|---|
| Length | 117 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 70.70 |
| Shannon entropy | 0.63067 |
| G+C content | 0.52570 |
| Mean single sequence MFE | -31.02 |
| Consensus MFE | -10.77 |
| Energy contribution | -10.85 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.76 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24203746 117 + 27905053 ACACGUGCCAAGGAAGCAAUUUC-UGUGCAAUCUAUGACACAAGCGGUCCUUCGAUCUUUGAAGCCUUCGGCUCUUUGGUCACUUUGGCGCAUUUAAAACGCCACGGGGCUCGAAUCG ....(((((((((..(((.....-..)))......((((.((((.((((((((((...)))))).....)))).))))))))))))))))).........(((....)))........ ( -33.50, z-score = -0.96, R) >droWil1.scaffold_181089 8860203 88 + 12369635 ACACGUGCCAAGGAAGCAAUUUC-UGUGC-------------------CCUCUG----------CCUACGGCUUUCUGGUCAUUUUUGCACAUUUAAAACGCCACGAGGCUCAAACUG ....((((..(((((....))))-)(((.-------------------((...(----------((...))).....)).)))....)))).........(((....)))........ ( -18.60, z-score = 0.13, R) >droEre2.scaffold_4820 6631299 117 - 10470090 ACACGUGCCAAGGAAGCAAUUUC-UGUGCAAUCUAUGACACAAGCGGUCCUUCGAUCCUUCAGGCCUCCGGCUCCUUGGUCACUUUGGCGCAUUUAAAACGCCACGAGCCUCGAAUCG ....((((((((((.((......-((((((.....)).))))..(((.(((..((....)))))...)))))))))))).)))..(((((.........)))))(((........))) ( -33.60, z-score = -1.30, R) >droYak2.chr3R 6534468 117 - 28832112 ACACGUGCCAAGGAAGCAAUUUC-UGUGCAAUCUAUGACACAAGCGGCCCUUCGAUCCUUGAAGCCUCCGGCUCUUUGGUCACUUUGGCGCAUUUAAAACGCCACGAGGCUCGCAUCG ....(((((((((..(((.....-..)))......((((.((((.((((((((((...)))))).....)))).))))))))))))))))).........(((....)))........ ( -36.30, z-score = -1.59, R) >droSec1.super_22 807222 112 + 1066717 ACACGUGCCAAGGAAGCAAUUUC-UGUGCAAUCUAUGACACAAGCGGUCCUUCGAUCCUUGAAGCCUCCGGCUCUUUGGUCACUUUGGCGCAUUUAAAACGCCACGGGGCUCG----- ....(((((((((..(((.....-..)))......((((.((((.((((....)))))))).((((...)))).....))))))))))))).........(((....)))...----- ( -35.00, z-score = -1.50, R) >droSim1.chr3R 23890610 112 + 27517382 ACACGUGCCAAGGAAGCAAUUUC-UGUGCAAUCUAUGACACAAGCGGUCCUUCGAUCCUUGAAGCCUCCGGCUCUUUGGUCACUUUGGCGCAUUUAAAACGCCACGGUGCUCG----- .(((((((((((((.((......-((((((.....)).))))..(((..((((((...))))))...)))))))))))).)))..(((((.........)))))..)))....----- ( -34.70, z-score = -1.77, R) >dp4.chr2 20463693 102 - 30794189 ACACGUGCCAAGGAAGCAAUUUC-UGUGCAAUCUAUGACACAGACGGCCCUGCG----------CCUUCGGCUCUUUGGUCACUUUGGCACAUUUAAAACGCCACGAGGCUCG----- ....(((((((((........((-((((((.....)).)))))).((((..(.(----------((...))).)...)))).))))))))).........(((....)))...----- ( -36.00, z-score = -3.16, R) >droPer1.super_0 10151240 102 + 11822988 ACACGUGCCAAGGAAGCAAUUUC-UGUGCAAUCUAUGACACAGACGGCCCUGCG----------CCUUCGGCUCUUUGGUCACUUUGGCACAUUUAAAACGCCACGAGGCUCG----- ....(((((((((........((-((((((.....)).)))))).((((..(.(----------((...))).)...)))).))))))))).........(((....)))...----- ( -36.00, z-score = -3.16, R) >droVir3.scaffold_12822 3622849 101 + 4096053 ACACGUGCCACGGAAGCAAUUUC-CGUGCAAUCUAUGGCGCAAACUGCGCCUGCGGCCCU----CACUCUUCUCCUUGGUCACUUUUGCACAUUUCAAACGGACCU------------ ....(.((((((((((...))))-)))(((......(((((.....))))))))))).).----.............((((.(.((((.......)))).))))).------------ ( -28.20, z-score = -1.86, R) >droMoj3.scaffold_6540 16938125 95 + 34148556 ACACGUGCCACGGAAGCAAUUUC-UGUGCAAUCUAUGGGGCAAACUGCGCCCGCGG--------CCCCAGCUUCCCUCCCUUCCCAUUCAACCCGCAAAUAUCG-------------- .....(((((((((((...))))-)))).......((((((....(((....))))--------))))).........................))).......-------------- ( -21.80, z-score = -0.03, R) >droGri2.scaffold_14906 1233812 102 + 14172833 ACACGUUGGACGGAAGCAAUUUCGUGUGCAAUCUAUGGCGCAAACUGUGCCUGAGGCCCU----CUUGGCGCUCCUUGGUCGCUUUUACACAUUUUAAACGGUCUC------------ .......((((((((....))))((((((.(((...(((((.....))))).((((((..----...))).)))...))).))....))))..........)))).------------ ( -27.20, z-score = -0.14, R) >droAna3.scaffold_13340 17004303 104 + 23697760 ACACGUGCCAAGGAAGCAAUUUC-UGUGCAAUCUAUGACACAAGCGGUCCGGU-----------CCUUCGAAUCCUCCGCCUCUUUGGCACAUUUAAAACGCCACGAGGC--AGCUCG ....((((((((((.((......-((((((.....)).))))((.(((.(((.-----------...))).)))))..)).)))))))))).........(((....)))--...... ( -31.30, z-score = -2.02, R) >consensus ACACGUGCCAAGGAAGCAAUUUC_UGUGCAAUCUAUGACACAAGCGGUCCUUCGAUCC_U____CCUCCGGCUCUUUGGUCACUUUGGCACAUUUAAAACGCCACGAGGCUCG_____ ....((((((.((..(((........))).......(((.......(((....................)))......))).)).))))))........................... (-10.77 = -10.85 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:46 2011