| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,202,603 – 24,202,659 |
| Length | 56 |
| Max. P | 0.722965 |
| Location | 24,202,603 – 24,202,659 |
|---|---|
| Length | 56 |
| Sequences | 9 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 86.34 |
| Shannon entropy | 0.29292 |
| G+C content | 0.35798 |
| Mean single sequence MFE | -12.29 |
| Consensus MFE | -8.86 |
| Energy contribution | -9.24 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24202603 56 - 27905053 CUUUAAACAGUCGGUAAUACGCGCAUUCAUAUGCGUAUUUAUCUGUAUGUGCUGUA ......((((((((.((((((((........))))))))...))).....))))). ( -13.60, z-score = -1.54, R) >droSim1.chr3R 23889473 56 - 27517382 CUUUAAACAGUCGGUAAUACGCGCAUUCAUAUGCGUAUUUAUCUGUAUGUGCUGUA ......((((((((.((((((((........))))))))...))).....))))). ( -13.60, z-score = -1.54, R) >droSec1.super_22 806079 56 - 1066717 CUUUAAACAGUCGGUAAUACGCGCAUUCAUAUGCGUAUUUAUCUGUAUGUGCUGUA ......((((((((.((((((((........))))))))...))).....))))). ( -13.60, z-score = -1.54, R) >droYak2.chr3R 6533358 56 + 28832112 CUUUAAACAGUCGGUAAUACGCGCAUUCAUAUGCGUAUUUAUCUGUAUGUGCUGUA ......((((((((.((((((((........))))))))...))).....))))). ( -13.60, z-score = -1.54, R) >droEre2.scaffold_4820 6630165 56 + 10470090 CUUUAAACAGUCGGUAAUACGCGCAUUCAUAUGCGUAUUUAUCUGUAUGUGCUGUA ......((((((((.((((((((........))))))))...))).....))))). ( -13.60, z-score = -1.54, R) >droAna3.scaffold_13340 17003585 56 - 23697760 CUUUAAACAUUCGCUAAUACGCGCAUUCAUAUGCGUAUUUAUCUGUAUGUACUAUA ......((((.((..((((((((........))))))))....)).))))...... ( -9.70, z-score = -1.49, R) >dp4.chr2 20462825 53 + 30794189 CUUUAAAUAUUCGGUAAUACGCGCAUUCAUAUGCGUAUUUAUCUGUAUCUGUG--- ............(((((...((((((....))))))..)))))..........--- ( -10.30, z-score = -1.99, R) >droPer1.super_0 10150375 53 - 11822988 CUUUAAAUAUUCGGUAAUACGCGCAUUCAUAUGCGUAUUUAUCUGUAUCUGUG--- ............(((((...((((((....))))))..)))))..........--- ( -10.30, z-score = -1.99, R) >droWil1.scaffold_181089 8859340 52 - 12369635 ----AUUCAUUUGGUAAUAUUCGCAUUCAUAUGCGUACGUAUGUGGGUGAGUUUUU ----...................(((((((((((....)))))))))))....... ( -12.30, z-score = -2.25, R) >consensus CUUUAAACAGUCGGUAAUACGCGCAUUCAUAUGCGUAUUUAUCUGUAUGUGCUGUA ......(((..(((.((((((((........))))))))...)))..)))...... ( -8.86 = -9.24 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:44 2011