| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,189,538 – 24,189,645 |
| Length | 107 |
| Max. P | 0.681288 |
| Location | 24,189,538 – 24,189,645 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 83.69 |
| Shannon entropy | 0.33180 |
| G+C content | 0.39130 |
| Mean single sequence MFE | -27.32 |
| Consensus MFE | -12.15 |
| Energy contribution | -11.99 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24189538 107 + 27905053 UGACCACCGAAUAUAAUUCAUCAUUCAUGUGUCCAAACUGACACGUCUGUGGCCGCAAACA----------AAAACGAAAUUCACUUUGUUUGCGGUU-GCCAAUUGUAUAAAGUAAG ..........((((((((........(((((((......)))))))..(..((((((((((----------((............)))))))))))).-.).))))))))........ ( -30.60, z-score = -3.79, R) >droSim1.chr3R 23876327 107 + 27517382 UGACCACCGAAUAUAAUUCAUCAUUCAUGUGUCCAAACUGACACGUCUGUGGCCGCAAACA----------AAAACGAAAUUCACUUUGUUUGCGGUU-GCCAAUUGUAUAAAGUAAG ..........((((((((........(((((((......)))))))..(..((((((((((----------((............)))))))))))).-.).))))))))........ ( -30.60, z-score = -3.79, R) >droSec1.super_22 793179 107 + 1066717 UGACCACCGAAUAUAAUUCAUCAUUCAUGUGUCCAAACUGACACGUCUGUGGCCGCAAACA----------AAAACGAAAUUCACUUUGUUUGCGGUU-GCCAAUUGUAUAAAGUAAG ..........((((((((........(((((((......)))))))..(..((((((((((----------((............)))))))))))).-.).))))))))........ ( -30.60, z-score = -3.79, R) >droYak2.chr3R 6519661 117 - 28832112 UGACCACCGAAUAUAAUUCAUCAUUCAUGUGUCCAAACUGACACGUCUGUGGCCGCAAAAAUACAAAAAAAAAAACGAAAUUCACUUUGUUUGCGGUU-GCCAAUUGUAUAAAGUAAG ..........((((((((........(((((((......)))))))..(..(((((((....(((((..................)))))))))))).-.).))))))))........ ( -24.67, z-score = -2.07, R) >droEre2.scaffold_4820 6615567 107 - 10470090 UGACCACCGAAUAUAAUUCAUCAUUCAUGUGUCCAAACUGACACGUCUGUGGCCGCAAAAA----------AAGAAGAAAUUCACUUUGUUUGCGGUU-GCCAAUUGUAUAAAGCAAG ..........((((((((........(((((((......)))))))..(..((((((((..----------..(((....)))......)))))))).-.).))))))))........ ( -28.40, z-score = -3.00, R) >droAna3.scaffold_13340 16990444 108 + 23697760 UGACCACCAAAUAUAAUUCAUCAUUCAUGUGUCCAAACUGACACGUCUGUGGCCGCAAACA----------AAAAUGAAAUUCACUUUGUUUGCGGUUUGCCAAUUGUAUAAAGUAAG ..........((((((((...(((..(((((((......)))))))..)))((((((((((----------((..((.....)).)))))))))))).....))))))))........ ( -30.00, z-score = -3.81, R) >dp4.chr2 20448571 107 - 30794189 UGACCACCAAAUAUAAUUCAUCAUUCAUGUGUCCAAACUGACACGUCUGUGGCCGCAACAC--------ACAAAAUGAAAUUCACUUUGUUUGCGGUUUUACAAUUGUACCAUGG--- ......(((..(((((((...(((..(((((((......)))))))..)))(((((((...--------(((((.((.....)).)))))))))))).....)))))))...)))--- ( -27.60, z-score = -2.46, R) >droPer1.super_0 10136054 107 + 11822988 UGACCACCAAAUAUAAUUCAUCAUUCAUGUGUCCAAACUGACACUUCUGUGGCCGCAACAC--------ACAAAAUGAAAUUCACUUUGUUUGCGGUUUUACAAUUGUACUAUGG--- ......(((..(((((((...(((....(((((......)))))....)))(((((((...--------(((((.((.....)).)))))))))))).....)))))))...)))--- ( -25.10, z-score = -2.41, R) >droWil1.scaffold_181089 8843495 108 + 12369635 UGACCACCAAAUAUAAUUCAUCAUUCAUGUGUCCAAACUGACACGUUUGUGGCCACAAACA----------GAAAUAAAAUUCACUUUGUGUGCGGUUGGCCAAUUGUAUAUGCUGGG ...(((.((.((((((((...(((..(((((((......)))))))..)))((((((((..----------(((......)))..)))))).))((....)))))))))).)).))). ( -29.80, z-score = -1.77, R) >droVir3.scaffold_12822 3605676 96 + 4096053 UGACAACCGAACAUAAUUCAUCAUUCAUGUGUCCGAACUGACACGUUUGUGGCCACAAACA----------GAAAUAAAAUUCACUUUGAGUGCGGUUGGC-AAAUG----------- ((.((((((((.....)))..((((((.(((((......)))))((((((....)))))).----------................)))))).))))).)-)....----------- ( -24.40, z-score = -1.55, R) >droMoj3.scaffold_6540 16921418 94 + 34148556 UGACAACUGAAUGUAAUCCAUCAUUCAUGUGUCCGAACUGACACGUUUGUGGCCACAAACA----------GAAAUAAAAUUCACUUUG--UGCGGUUGGC-ACUUG----------- .((((..((((((........))))))..))))(.(((((.(((((((((....)))))).----------(((......))).....)--))))))).).-.....----------- ( -25.10, z-score = -1.68, R) >droGri2.scaffold_14906 1218195 95 + 14172833 CGACAACCGAACAUAAUUCAUCAUUCAUGUGUCCGAACUGACACGUUUGUGGCCACAA-CA----------GAAAUAAAAUUCACUUUGUAUGCGGUUGGC-AAUUG----------- ...((((((.(((.......((((..(((((((......)))))))..))))......-..----------(((......)))....)))...))))))..-.....----------- ( -21.00, z-score = -0.61, R) >consensus UGACCACCGAAUAUAAUUCAUCAUUCAUGUGUCCAAACUGACACGUCUGUGGCCGCAAACA__________AAAAUGAAAUUCACUUUGUUUGCGGUU_GCCAAUUGUAUAAAGUAAG .....(((............((((..(((((((......)))))))..))))......................(((((......)))))....)))..................... (-12.15 = -11.99 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:43 2011