| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,180,356 – 24,180,449 |
| Length | 93 |
| Max. P | 0.696229 |
| Location | 24,180,356 – 24,180,449 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.90 |
| Shannon entropy | 0.40112 |
| G+C content | 0.47301 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -14.88 |
| Energy contribution | -14.63 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.696229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24180356 93 - 27905053 GCCAGUGAGAUAGUCCAAUGCCCUCGGGGUAUAUUUUUCGCCACUUUCGCUA----------CGGCCAAAA----GUGUUGACUGUCUUUGAUUUUGUUUGUCUGCC ((....(((((((((..((((((...)))))).........((((((.((..----------..))..)))----)))..))))))))).(((.......))).)). ( -25.40, z-score = -1.74, R) >droSim1.chr3R 23862704 93 - 27517382 GCCAGUGAGAUAGUCCAAUGCCCUCGGGGUAUAUUUUUCGCCACUUUCGCUA----------CGGCCAAAA----GUGUUGACUGUCUUUGAUUUUGUUUGUCUGCC ((....(((((((((..((((((...)))))).........((((((.((..----------..))..)))----)))..))))))))).(((.......))).)). ( -25.40, z-score = -1.74, R) >droSec1.super_22 784158 93 - 1066717 GCCAGUGAGAUAGUCCAAUGCCCUCGGGGUAUAUUUUUCGCCACUUUCGCUA----------CGGCCAAAA----GUGUUGACUGUCUUUGAUUUUGUUUGUCUGCC ((....(((((((((..((((((...)))))).........((((((.((..----------..))..)))----)))..))))))))).(((.......))).)). ( -25.40, z-score = -1.74, R) >droYak2.chr3R 6510423 92 + 28832112 GCCAGUGUGAUAGUCCAAUGCCCUCGGGGUAUA-UUUUCGCCACUUUCGCUC----------CGGCCAAAA----GUGUUGACUGUCUUUGAUUUUGUUUGUCUGUC ..(((...(((((((..((((((...)))))).-.......((((((.((..----------..))..)))----)))..))))))).)))................ ( -21.50, z-score = -0.90, R) >droEre2.scaffold_4820 6606603 84 + 10470090 --------GAUAGUCCAAUGCCCUCGGGGUAUA-UUUUCGCCACUUUCGCUA----------CGGCCAAAA----GUGUUGACUGUCUUUGAUUUUGUUUGUCUGUC --------(((((((..((((((...)))))).-.......((((((.((..----------..))..)))----)))..))))))).................... ( -23.10, z-score = -2.49, R) >droAna3.scaffold_13340 16981795 90 - 23697760 --GACUGUGAUAGUCCAAUGCCCUCGGGGUAUAUUUUUCGCCACUUUCGCCAU----------GGCC-AAA----GUGUUGACUGUCUUUGAUUUUGUUUGUCUGCU --......(((((((..((((((...)))))).........((((((.((...----------.)).-)))----)))..))))))).................... ( -23.60, z-score = -1.64, R) >dp4.chr2 20438435 93 + 30794189 --GACAGUGAUAGUCCAAUGCCCUUGGGGUAUAUUUUU-GCCACUUUCGCCGC-----CC--CGGCCAAAA----GUGUUGACUGUCUUUGAUUUUGUUUGUCUGCC --(((((.(((((((..((((((...))))))......-..((((((.((((.-----..--))))..)))----)))..)))))))...........))))).... ( -26.70, z-score = -2.40, R) >droPer1.super_0 10125976 93 - 11822988 --GACAGUGAUAGUCCAAUGCCCUUGGGGUAUAUUUUU-GCCACUUUCGCCGC-----CC--CGGCCAAAA----GUGUUGACUGUCUUUGAUUUUGUUUGUCUGCC --(((((.(((((((..((((((...))))))......-..((((((.((((.-----..--))))..)))----)))..)))))))...........))))).... ( -26.70, z-score = -2.40, R) >droWil1.scaffold_181089 8832491 98 - 12369635 GACAUAGUGAUAGUCCAAUGCCCUCGGGGUGUAUUUUUCGCCACUUUCGCCAG-----UUGGCAGCAAAAA----GUGUUGACUGUCUUUGAUUUUGUUUGUCUGCC (((((((.(((((((.(((((......((((.......))))......(((..-----..)))........----)))))))))))).)))........)))).... ( -22.80, z-score = -0.11, R) >droVir3.scaffold_12822 3591832 101 - 4096053 --AAGGCAGGCGGUCGAAUGCCCUCAGGGUGUAUUUUUCGCCACUUUCGCCAGU----UUCCAAGUGUGUGUUGUGUGUUGACUGUCUUUGAUUCUGUUUGUCUGCA --.(((((((((((((((.((..((((.(..((.....((((((((........----....))))).))).))..).))))..)).)))))..))))))))))... ( -26.90, z-score = -0.65, R) >droGri2.scaffold_14906 1207376 103 - 14172833 GACAGUCAGUCAGUCGAAUGCCCUCUGGGUGUAUUUUUCGCCACUUUCGCUACAGUCGCCGCUUACGAAAGUGUUGUGUUGACUGCCUUUGAUUCUGUUUCUC---- (((((((((.(((((((((((((...))))))......(((((((((((.((.(((....)))))))))))))..))))))))))...))))..)))))....---- ( -29.50, z-score = -1.99, R) >consensus G_CAGUGAGAUAGUCCAAUGCCCUCGGGGUAUAUUUUUCGCCACUUUCGCUA__________CGGCCAAAA____GUGUUGACUGUCUUUGAUUUUGUUUGUCUGCC ........(((((((..((((((...))))))................(((............)))..............))))))).................... (-14.88 = -14.63 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:42 2011