| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,176,584 – 24,176,654 |
| Length | 70 |
| Max. P | 0.973756 |
| Location | 24,176,584 – 24,176,654 |
|---|---|
| Length | 70 |
| Sequences | 7 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 69.33 |
| Shannon entropy | 0.61553 |
| G+C content | 0.36504 |
| Mean single sequence MFE | -11.46 |
| Consensus MFE | -6.69 |
| Energy contribution | -6.81 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24176584 70 + 27905053 ACCUCAAAACAAAUGAACUGAUAAGUGUUGGCCGCACCAAACAAGGCGAAACAAUAGUUAUCAAGUGACU ................((((((((.(((((..(((..........)))...))))).))))).))).... ( -14.10, z-score = -1.65, R) >droSim1.chr3R 23858879 70 + 27517382 ACCUCAAAACAAAUGAACUGAUAAGUGUUGGCCGGAGCAAACAAGGCGAAACAAUAGUUAUCAAGUGACU ................((((((((.((((((((...........)))....))))).))))).))).... ( -13.30, z-score = -1.07, R) >droSec1.super_22 780318 70 + 1066717 ACCUCAAAACAAAUGAACUGAUAAGUGUUGGCCGGAGCAAACAAGGCGAAACAAUAGUUAUCAAGUGACU ................((((((((.((((((((...........)))....))))).))))).))).... ( -13.30, z-score = -1.07, R) >droEre2.scaffold_4820 6600236 66 - 10470090 ACCUCAAAACAAAUGAACUGAUAAGUGUUGAGUUGAGGCACC----CGAAACAAUAGUUAUCAAGUGACU .((((((..(((....(((....))).)))..))))))(((.----.(((((....))).))..)))... ( -14.00, z-score = -2.02, R) >droYak2.chr3R 6506326 54 - 28832112 ACCUCAAAACAAAUGAACUGAUAAGUGUUGAG----------------AAACAAUAGUUAUCAAGUGACU ................((((((((.(((((..----------------...))))).))))).))).... ( -10.10, z-score = -1.90, R) >droAna3.scaffold_13340 16978267 67 + 23697760 UUUUGAAAACAAAAGAACUGAUGAGAGUUAAGACCAAUAGUUGA---AGAACAAUAGUCAACAAGUGGCA (((((....)))))....((((....)))).(.(((...(((((---..(....)..)))))...)))). ( -9.50, z-score = -1.02, R) >droPer1.super_0 10121855 57 + 11822988 ACUGCUAAGAAAAUUAUCUGAUAAGUGCUCAAACC-------------CCAUAGUAGUUCUCAAAAAGUU ((((((((((......))).....((......)).-------------...)))))))............ ( -5.90, z-score = -0.67, R) >consensus ACCUCAAAACAAAUGAACUGAUAAGUGUUGACCGCAGCAAAC_A__CGAAACAAUAGUUAUCAAGUGACU ................((((((((.(((((.....................))))).))))).))).... ( -6.69 = -6.81 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:41 2011