| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,167,642 – 24,167,733 |
| Length | 91 |
| Max. P | 0.599984 |
| Location | 24,167,642 – 24,167,733 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 74.28 |
| Shannon entropy | 0.46157 |
| G+C content | 0.53559 |
| Mean single sequence MFE | -28.67 |
| Consensus MFE | -18.08 |
| Energy contribution | -18.75 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24167642 91 + 27905053 ----------AUGUGCUGGCCAUGGCCAGCGGCAGCGGCUCUUGCGGUUGGUGGCUUGCCAAAAUCCUGUGUGCCACCUCUGCC--UACACACCUAGAAACCU ----------.(((((((((....))))))((((((.((....)).)..((((((..((((......)).)))))))).)))))--...)))........... ( -35.50, z-score = -1.05, R) >droSim1.chr3R 23850055 89 + 27517382 ----------AUGUGCUGGCCAUGGCUAGCUGCAGCGACUCUUGCGGUUGGUGGCUUGCCAAAAUCCUGUGUGCCACCUCUGCC----UACACCUAGAAACCU ----------.(((((((((....)))))).)))((((...))))((((((((((..((((......)).))))))))((((..----......)))))))). ( -29.60, z-score = -0.95, R) >droSec1.super_22 771441 89 + 1066717 ----------AUGUGCUGGCCAUGGCUAGCUGCAGCGACUCUUGCGGUUGGUGGCUUGCCAAAAUCCUGUGUGCCACCUCUACC----UACACCUAGAAACCU ----------.(((((((((....)))))).)))((((...))))((((((((((..((((......)).))))))))((((..----......)))))))). ( -29.90, z-score = -1.46, R) >droYak2.chr3R 6497074 92 - 28832112 ----------AUGUGCUGGCCAUGGCCAGCUGCAGCGACUCUUGUGGUUGGUGGCUUGCCAAAAUCCUGUGUGCCACCUCUGCC-ACCUACACGUAGAAACCU ----------.(((((((((....)))))).)))(((......(((((.((((((..((((......)).))))))))...)))-)).....)))........ ( -35.00, z-score = -2.05, R) >droEre2.scaffold_4820 6591216 93 - 10470090 ----------AUGUGCUAGCCAUGGCCAACUGCAGCGACUCUUGUGGUUGGUGGCUUGCCAAAAUCAUGUGUGCCAUCUCUGCCUACACAUAUGUAGAAACCU ----------.((.((.((((...((((((..(((......)))..)))))))))).))))....((((((((.............))))))))......... ( -29.52, z-score = -1.23, R) >droWil1.scaffold_181089 9863822 96 + 12369635 AUGCAACGUGACCCACCCGCUAUGGCCUGCAUCCG-AAUUGUUGCUUGUAGUAGUUGUCCAAAAAACCUUCUGCUUCGUCUUUC----CAAAAUCAAAACU-- ..((((((((...)))..((........)).....-....)))))..((((..(((........)))...))))..........----.............-- ( -12.50, z-score = 0.39, R) >consensus __________AUGUGCUGGCCAUGGCCAGCUGCAGCGACUCUUGCGGUUGGUGGCUUGCCAAAAUCCUGUGUGCCACCUCUGCC____CACACCUAGAAACCU ...........(((((((((....)))))).)))((((...))))(((.((((((.(((.........))).))))))...)))................... (-18.08 = -18.75 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:39 2011