| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,160,975 – 24,161,025 |
| Length | 50 |
| Max. P | 0.996796 |
| Location | 24,160,975 – 24,161,025 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 94.06 |
| Shannon entropy | 0.09544 |
| G+C content | 0.39814 |
| Mean single sequence MFE | -6.05 |
| Consensus MFE | -5.78 |
| Energy contribution | -6.03 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.22 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.99 |
| SVM RNA-class probability | 0.996796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24160975 50 - 27905053 AAGAAUAGUAAUCCCCAUUGCGAAA-GCCCCAAGUUCAAAGUGCAGUGUAU ...............(((((((..(-((.....))).....)))))))... ( -6.40, z-score = -3.09, R) >droSim1.chr3R 23843350 50 - 27517382 AAAAAUAGUAAUCCCCAUUGCGAAA-GCCCCAAGUUCAAAGUGCAGUGUAU ...............(((((((..(-((.....))).....)))))))... ( -6.40, z-score = -3.50, R) >droSec1.super_22 764757 50 - 1066717 AAAAAUAGUAAUCCCCAUUGCGAAA-GCCCCAAGUUCAAAGUGCAGUGUAU ...............(((((((..(-((.....))).....)))))))... ( -6.40, z-score = -3.50, R) >droEre2.scaffold_4820 6583982 51 + 10470090 AAAAAUAUUAAGUCCCAUUGCGAAAUCCCCCAAGUUCAAAGUGCAGUGUAU ...............(((((((...................)))))))... ( -5.01, z-score = -2.79, R) >consensus AAAAAUAGUAAUCCCCAUUGCGAAA_GCCCCAAGUUCAAAGUGCAGUGUAU ...............(((((((....((.....))......)))))))... ( -5.78 = -6.03 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:38 2011