| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,157,891 – 24,158,005 |
| Length | 114 |
| Max. P | 0.666938 |
| Location | 24,157,891 – 24,158,005 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 65.37 |
| Shannon entropy | 0.65964 |
| G+C content | 0.55160 |
| Mean single sequence MFE | -37.68 |
| Consensus MFE | -12.79 |
| Energy contribution | -12.77 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24157891 114 + 27905053 CUGUUUAUUUGGCUCUCCCUUUUGCGCACGCUUUCGCCAUGUUUGGGGGGGGGGG-UUGGCGUGUGAGGUGGGCGGUAGGCGGUGGGGGCGGCUGCCUGAUGAAAUAGAUAAACG ..(((((((((((((..((((.(((((.(.((..(.(((....))).)..)).).-...))))).)))).))))..((((((((.(...).))))))))......))))))))). ( -47.40, z-score = -2.56, R) >droVir3.scaffold_13047 3830864 103 - 19223366 CAAAUCAUAAAUUUUUGCCGUUUGCUCUU--UCUCCACGUUUUUGUGUUGGAUAA-ACAACAACAAACUACAAUUGCUGACGUUG-ACGCCGCAGCCGGCGUCAACG-------- ....(((..((((...((.....))....--.......((.(((((((((.....-.)))).)))))..))))))..)))(((((-((((((....)))))))))))-------- ( -27.70, z-score = -2.42, R) >droEre2.scaffold_4820 6580932 96 - 10470090 CUGUUUAUUCGGCUCUCCCUUU-GCGCCUGCUUUCGUCGUGUUUGCGGGGGAUAAAGUGGGCGGUG---------------GG---AGGCGGCCGCCUGACGGAAUAGAUAAACG ..(((((((((((((((((...-.((((..(((((.((((....)))).)))...))..))))..)---------------))---))..)))))((....))....))))))). ( -39.00, z-score = -1.79, R) >droYak2.chr3R 6487091 104 - 28832112 CUGUUUAUUUGGCUCUCCCUUUUGCGCCCGCUUUCGUCAUGUUUGCGGGGGGUAAAGUGAGUGGUG--------GGUGGUGGG---AGGCGGCCGCCUGACGAGAUAGAUAAACG ..(((((((((.(((((((.....((((((((..(.((((.(((((.....)))))))))).))))--------))))..)))---)(((....)))....))).))))))))). ( -39.00, z-score = -1.37, R) >droSec1.super_22 761715 102 + 1066717 CUGUUUAUUUGGCUCUCCCUUUUGCGCACGCUUUCGUCAUGUUUGCGGGGGGCGG-GUGGUUUGUG---------GUGGGAGG---AGGCCGUCGCCUGAUGAAAUAGAUAAACG ..(((((((((..(((((((((..((((.(((((((((.((....))...)))))-).))).))).---------)..)))))---((((....)))))).))..))))))))). ( -33.10, z-score = -0.35, R) >droSim1.chr3R 23840274 111 + 27517382 CUGUUUAUUUGGCUCUCCCUUUUGCGCACGCUUUCGUCAUGUUUGCGGGGGGCGG-GUGGUUUGUGCGGUGGGUGGUGGGAGG---AGGCGGCCGCCUGAUGAAAUAGAUAAACG ..(((((((((..((((((..(..(.(((.((..((.((....))))..))(((.-(.....).))).))).)..).))))))---((((....)))).......))))))))). ( -39.90, z-score = -0.82, R) >consensus CUGUUUAUUUGGCUCUCCCUUUUGCGCACGCUUUCGUCAUGUUUGCGGGGGGUAA_GUGGCUUGUG________GGUGGGAGG___AGGCGGCCGCCUGAUGAAAUAGAUAAACG .(((((((((.(.((((((....((....))......((....)).))))))..................................((((....))))..).))))))))).... (-12.79 = -12.77 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:34 2011