| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,153,402 – 24,153,490 |
| Length | 88 |
| Max. P | 0.562306 |
| Location | 24,153,402 – 24,153,490 |
|---|---|
| Length | 88 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 85.05 |
| Shannon entropy | 0.26621 |
| G+C content | 0.44836 |
| Mean single sequence MFE | -24.64 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.12 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24153402 88 - 27905053 GGAAAGUCGUUUCUCUGCGCAAAAUGACAAGUCCUUGUGACUCAUGA---UCCUGCAAUUGGGUUGAGUCAUGG-UUUUA-UGCGUACUUUUC (((((((.........(((((....((....)).(..(((((((..(---(((.......)))))))))))..)-.....-)))))))))))) ( -23.10, z-score = -1.43, R) >droEre2.scaffold_4820 6576153 89 + 10470090 GGAAUGUCCUUAUUGUGCGCAAAAUGACAAGUCCUUGUGACUCAUGU---CCCUGCAAUUGGGUGGAGUCAUGGUUUUUA-UGCGUAUUUUUC ((.....)).....(((((((....((....)).(..((((((....---(((.......)))..))))))..)......-)))))))..... ( -24.10, z-score = -1.61, R) >droYak2.chr3R 6482619 82 + 28832112 -----------GGAAUGCGCAGAAUGGCAAGUCCUUGUGACUCAUGAUGUCCCUGCAAUUGGGUGGAGUCAUGGUUUUUAUUACGUACUUUUC -----------(((.(((........)))..)))(..((((((.......(((.......)))..))))))..)................... ( -18.80, z-score = 0.27, R) >droSec1.super_22 757348 88 - 1066717 GGAAAGUCCUUUCUCUGCGCAAAAUGACAAGUCCUUGUGACUCAUGA---CCCUGCAAUUGGGCGGAGUCAUGG-UUUUA-UGCGUAGUUUUC (((((....)))))(((((((....(((.((((.....))))(((((---(.((((......)))).)))))))-))...-)))))))..... ( -28.60, z-score = -2.61, R) >droSim1.chr3R 23835570 88 - 27517382 GGAAAGUCCUUUCUCUGCGCAAAAUGACAAGUCCUUGUGACUCAUGA---CCCUGCAAUUGGGCGGAGUCAUGG-UUUUA-UGCGUAGUUUUC (((((....)))))(((((((....(((.((((.....))))(((((---(.((((......)))).)))))))-))...-)))))))..... ( -28.60, z-score = -2.61, R) >consensus GGAAAGUCCUUUCUCUGCGCAAAAUGACAAGUCCUUGUGACUCAUGA___CCCUGCAAUUGGGUGGAGUCAUGG_UUUUA_UGCGUACUUUUC ..............(((((((....((....)).(..((((((.......(((.......)))..))))))..).......)))))))..... (-18.00 = -18.12 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:33 2011