| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,868,867 – 8,868,932 |
| Length | 65 |
| Max. P | 0.735027 |
| Location | 8,868,867 – 8,868,932 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 69.69 |
| Shannon entropy | 0.53355 |
| G+C content | 0.56016 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -11.46 |
| Energy contribution | -12.94 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.735027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8868867 65 - 23011544 GCAGCGCGGGUCCAGAUGCCUGGAUCGAAAGCUGCUGCAAGCGAUUCGAUGCGAAUGCACUUAGA (((((((.(((((((....)))))))....)).)))))..((.(((((...)))))))....... ( -25.90, z-score = -1.85, R) >droAna3.scaffold_12916 10533520 64 - 16180835 GCAGCUUGGCUCCAGAUGCUUUGAUCGAAAGCUGCUGCA-GUGAGAUGGUACUUUUACACUUGAA (((((..((((...(((......)))...))))))))).-((((((......))))))....... ( -17.40, z-score = -0.55, R) >droEre2.scaffold_4929 9462078 54 - 26641161 GCAGCUC-GGUCCAGAUGCUGGCAGCGAAAGCUGCUGCGCGCGAGUGCACUUGGA---------- .((((((-......)).))))(((((....)))))(((((....)))))......---------- ( -27.00, z-score = -1.74, R) >droYak2.chr2L 11516099 55 - 22324452 GCAGCUCGGGUCCAGAUCCUUGGAUCGAAAGCUGCUGCAAGCGAAUGCACUUAGA---------- ((((((..(((((((....)))))))...))))))((((......))))......---------- ( -20.10, z-score = -1.64, R) >droSec1.super_3 4342992 65 - 7220098 GCAGCGCGGGUCCAGAUGCGUGGAUCGAAAGCUGCUGCAAGCGAAUGGAUGCGAAUGCACUUAGA (((...((.(((((..((((..(..(....)...)..)..)))..))))).))..)))....... ( -22.30, z-score = -0.75, R) >consensus GCAGCUCGGGUCCAGAUGCUUGGAUCGAAAGCUGCUGCAAGCGAAUGGAUGCGAAU_CACUU__A ((((((..(((((((....)))))))...)))))).............................. (-11.46 = -12.94 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:10 2011