| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,111,446 – 24,111,515 |
| Length | 69 |
| Max. P | 0.639011 |
| Location | 24,111,446 – 24,111,515 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 77.64 |
| Shannon entropy | 0.43399 |
| G+C content | 0.46085 |
| Mean single sequence MFE | -13.87 |
| Consensus MFE | -8.81 |
| Energy contribution | -9.77 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24111446 69 + 27905053 CUGAAUUCUGCAUCCUGCAUCCCAUUCGAUCAGAUCCGCUUACGAUGCACUGUAGAAAAAGUGCAAAGC .....(((((((...((((((.....((........)).....)))))).)))))))............ ( -14.40, z-score = -1.01, R) >droSim1.chr3R 23795397 69 + 27517382 CUGAAUUCUGCAUCCUGCAUCCCAUUCGAUCAGAUCCGCUUACGAUGCACUGUACAAAAAAUACAAAUC .((.((..(((((((((.(((......))))))....(....)))))))..)).))............. ( -9.50, z-score = -1.13, R) >droSec1.super_22 715643 65 + 1066717 --GAAUUCUGCAUCCUGCAUCCCAUUCGAUCAGAUCCGCUUACGAUGGACUGUAGGAAAA--ACAGAUC --....((((..(((((((..((((.((...((.....))..))))))..)))))))...--.)))).. ( -17.40, z-score = -2.14, R) >droYak2.chr3R 6439162 69 - 28832112 CUGAAUUCUGCAUUCUGCAUCCCAUUCGAACAGAUCCGCUUACGAUGCACUGCAGAAAAAAUCCAGAGC .....(((((((...((((((.....((........)).....)))))).)))))))............ ( -16.40, z-score = -2.10, R) >droEre2.scaffold_4820 6531838 69 - 10470090 CUGAAUUCUGCAUCCUGCAUCCCAUUCGAUCAGAUCCGCUUACGAUGCACUGCAGGAAAAAUCCAGAGC .....(((((((...((((((.....((........)).....)))))).)))))))............ ( -15.90, z-score = -1.02, R) >droAna3.scaffold_13340 22238590 54 + 23697760 --------------CUGUCUCGCAUCUGAUCGAAUCCGCUUGCGCAACAGUG-AGAAAAAUUCUUUAGC --------------((((..((((..((........))..))))..)))).(-(((.....)))).... ( -9.60, z-score = 0.14, R) >consensus CUGAAUUCUGCAUCCUGCAUCCCAUUCGAUCAGAUCCGCUUACGAUGCACUGUAGAAAAAAUCCAGAGC .....(((((((...((((((.....((........)).....)))))).)))))))............ ( -8.81 = -9.77 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:26 2011