| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,105,309 – 24,105,429 |
| Length | 120 |
| Max. P | 0.943214 |
| Location | 24,105,309 – 24,105,429 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.97 |
| Shannon entropy | 0.11176 |
| G+C content | 0.39486 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -30.33 |
| Energy contribution | -30.26 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24105309 120 + 27905053 GGUGCAUCGGCUUUAUGUUGUGUAUAUGUCUGGCCGAGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU ..(((((((((...((((.....))))(((.((((((.((....)).)))))).))).......)))))))))((((((((((..((((.....)))).))))))))))........... ( -33.60, z-score = -2.39, R) >droAna3.scaffold_13340 22233495 120 + 23697760 GGUGCAUCGGCUUUAUGUUGUGUAUGUGUCUGGCCGGGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUC ..(((((((((..((((.....)))).(((.((((((.((....)).)))))).))).......)))))))))((((((((((..((((.....)))).))))))))))........... ( -31.90, z-score = -1.56, R) >droEre2.scaffold_4820 6525603 120 - 10470090 GGUGCAUCGGCUUUAUGUUGUGUAUAUGUCUGGCCGAGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU ..(((((((((...((((.....))))(((.((((((.((....)).)))))).))).......)))))))))((((((((((..((((.....)))).))))))))))........... ( -33.60, z-score = -2.39, R) >droYak2.chr3R 6432839 120 - 28832112 GGUGCAUCGGCUUUAUGUUGUGUAUAUGUCUGGCCGAGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU ..(((((((((...((((.....))))(((.((((((.((....)).)))))).))).......)))))))))((((((((((..((((.....)))).))))))))))........... ( -33.60, z-score = -2.39, R) >droSec1.super_22 709501 120 + 1066717 GGUGCAUCGGCUUUAUGUUGUGUAUAUGUCUGGCCGAGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU ..(((((((((...((((.....))))(((.((((((.((....)).)))))).))).......)))))))))((((((((((..((((.....)))).))))))))))........... ( -33.60, z-score = -2.39, R) >droSim1.chr3R 23789237 120 + 27517382 GGUGCAUCGGCUUUAUGUUGUGUAUAUGUCUGGCCGAGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU ..(((((((((...((((.....))))(((.((((((.((....)).)))))).))).......)))))))))((((((((((..((((.....)))).))))))))))........... ( -33.60, z-score = -2.39, R) >droWil1.scaffold_181108 1349728 120 + 4707319 GAUGCAUCGGCUUUAUGUUGUGCAUGUGUCUGGCCAUGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU ..(((((((((..((((.....)))).(((.(((((((.......)).))))).))).......)))))))))((((((((((..((((.....)))).))))))))))........... ( -33.00, z-score = -1.94, R) >droPer1.super_0 10006335 113 - 11822988 -------CGGCUUUAUGUUGUGUAUGUGUCUGGCUGAGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU -------((((.....)))).(((((((((.(((..((((((...((......))...)))))))))))))))((((((((((..((((.....)))).)))))))))).....)))... ( -20.70, z-score = 0.80, R) >dp4.chr2 22811434 113 - 30794189 -------CGGCUUUAUGUUGUGUAUGUGUCUGGCCGAGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU -------((((.....)))).(((((((((.((((((.((....)).)))))).....((.....))))))))((((((((((..((((.....)))).)))))))))).....)))... ( -23.10, z-score = 0.20, R) >droVir3.scaffold_13047 3775381 120 - 19223366 UCUGCAUCGACUUUAUGUUGUGCAUGUGUCUGGCCGGGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU ..(((((((((........))(((...(((.((((((.((....)).)))))).)))......))))))))))((((((((((..((((.....)))).))))))))))........... ( -28.90, z-score = -0.64, R) >droMoj3.scaffold_6540 15211417 120 - 34148556 UCUGCAUCGGCUUUAUGUUGUGCAUGUGUCUGGCCGAGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU ..(((((((((..((((.....)))).(((.((((((.((....)).)))))).))).......)))))))))((((((((((..((((.....)))).))))))))))........... ( -35.50, z-score = -2.74, R) >droGri2.scaffold_14830 4544103 117 + 6267026 --UGCAUCGGCUUUAUGUUGUGCAUGUGUCUGGUUGGGGUCUUUGCGUUGGCCUGAUUGGAUU-GCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACAUU --(((((((((..((((.....)))).(((..((..((.((........))))..))..))).-)))))))))((((((((((..((((.....)))).))))))))))........... ( -35.70, z-score = -2.76, R) >consensus GGUGCAUCGGCUUUAUGUUGUGUAUGUGUCUGGCCGAGGUCUUUACGUUGGCUUGAUUGGAUUUGCCGAUGCAAAUGAAGAAUCCAAUUUUUAAAGUUUGUUUUUCGUUAUCGUUACGUU ..(((((((((..((((.....)))).(((.((((((.((....)).)))))).))).......)))))))))((((((((((..((((.....)))).))))))))))........... (-30.33 = -30.26 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:25 2011