| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,085,379 – 24,085,472 |
| Length | 93 |
| Max. P | 0.994802 |
| Location | 24,085,379 – 24,085,472 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 84.35 |
| Shannon entropy | 0.29236 |
| G+C content | 0.50498 |
| Mean single sequence MFE | -35.40 |
| Consensus MFE | -23.36 |
| Energy contribution | -24.95 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.18 |
| Mean z-score | -3.27 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.74 |
| SVM RNA-class probability | 0.994802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24085379 93 + 27905053 AAUACACUUUUCUGGUUCAAUUGCGGCUGUUGGCCAUGACUUGGCCGGC----AGCGGCGUCGGAAUCGAAAUCAGAAUCAGGAAUCGGCUGUGGAU ..((((((((((((((((....((.(((((((((((.....))))))))----))).)).(((....))).....))))))))))..)).))))... ( -41.00, z-score = -4.46, R) >droSim1.chr3R 23769799 93 + 27517382 AAUACACUUUUCUGGUUCAAUUGCGGCUGUUGGCCAUGACUUGGCCGGC----AGCGGCGUCGGAAUCGAAAUCAGAAUCAGGAAUCGGCUGUGGAU ..((((((((((((((((....((.(((((((((((.....))))))))----))).)).(((....))).....))))))))))..)).))))... ( -41.00, z-score = -4.46, R) >droSec1.super_22 690119 93 + 1066717 AAUACACUUUUCUGGUUCAAUUGCGGCUGUUGGCCAUGACUUGGCCGGC----AGCAGCGUCGGAAUCGAAAUCAGAAUCAGGAAUCGGCUGUGGAU ..((((((((((((((((....((.(((((((((((.....))))))))----))).)).(((....))).....))))))))))..)).))))... ( -39.20, z-score = -4.05, R) >droYak2.chr3R 6411466 96 - 28832112 AAUACACUUUUCUGGUUCAAUUGCGGCUGUUGGCCAUGACUUGGCCGGCCGACAGCGGCGUUGGAAUCGAUAUCAGAAUCAGGAAU-AGCUGUGGAU ..((((((((((((((((....((.((((((((((...........)))))))))).))((((....))))....)))))))))).-)).))))... ( -39.00, z-score = -3.74, R) >droEre2.scaffold_4820 6504662 92 - 10470090 AAUACACUUUUCUGGUUCAAUUGCGGCUGUUGGCCAUGACUUGGCCGGC----AGCAACGUUGGAAUCGAAAUCAAAAUCAGGAAU-AGCUGUGGAU ..((((((.(((((((((...((..(((((((((((.....))))))))----)))..))...)))))((........)).)))).-)).))))... ( -34.00, z-score = -3.71, R) >droMoj3.scaffold_6540 15191213 84 - 34148556 AAUACACUUUUCUGCUUCAAUUGAGACUG--GGCCACGACUUGGCCAGC----AGCGGCAGCCCCAUUACCAUUACCACUGGCAAA-GGCC------ ...........(((((((....)).....--(((((.....))))))))----)).(((.(((.................)))...-.)))------ ( -18.23, z-score = 0.83, R) >consensus AAUACACUUUUCUGGUUCAAUUGCGGCUGUUGGCCAUGACUUGGCCGGC____AGCGGCGUCGGAAUCGAAAUCAGAAUCAGGAAU_GGCUGUGGAU ..((((((((((((((((...(((.(((((((((((.....))))))))....))).)))(((....))).....))))))))))..)).))))... (-23.36 = -24.95 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:18 2011