| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,059,798 – 24,059,891 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 24,059,798 – 24,059,891 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 69.91 |
| Shannon entropy | 0.56111 |
| G+C content | 0.60506 |
| Mean single sequence MFE | -34.26 |
| Consensus MFE | -21.46 |
| Energy contribution | -22.74 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.46 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 24059798 93 + 27905053 GUAUGGAAGGAUGGAAGGUGGGCUGGUGGCUGGCACGCUGGUGGGCGGGCUGUUGUAGGUGCCUAGUUACAGUUGCUGCCAGCCGCAGUCGUA- ....................(((((.(((((((((((((....))))((((((..(((....)))...))))))..))))))))))))))...- ( -37.30, z-score = -0.84, R) >droSim1.chr3R 23749713 93 + 27517382 GGAUGGAAGGUGGGCCGGUGGGCUGCUGGCUGGCACGCUGGUGGGCGGGCUGUUGUAGGUGCCUAGUUACAGUUGCUGCCAGCCGCAGUCGUA- ........((....))....((((((.((((((((((((....))))((((((..(((....)))...))))))..))))))))))))))...- ( -41.00, z-score = -0.26, R) >droSec1.super_22 671999 93 + 1066717 GGAUGGAAGGUGGGCCGGUGGCCUGGUGUCUGGCACGCUGGUGGGUGGGCUGUUGUAGGUGCCUAGUUACAGUUGCUGCCAGCCGCAGUCGUA- .....((..((((((((((((((........))).))))))).((..((((((..(((....)))...)))))..)..))..))))..))...- ( -37.50, z-score = 0.03, R) >droYak2.chr3R 6392473 74 - 28832112 -------------------GGAUGGAAGGUGGGUGGGUUUGUGGGCGGGCUGUUGUAGGUGCCUAGUUACAGUUGCUGCCAGCCGCAGUCGUA- -------------------.(((....(((.((..(..((((((..((((..........))))..))))))...)..)).)))...)))...- ( -23.00, z-score = 0.33, R) >droAna3.scaffold_13340 22196775 91 + 23697760 GUAUUAAAAAAGAAAUGACUGGGUGGUGCCAAGGAGGGGGACUCUUGGGUGGCU---GAUGCCUAGUUACAGUUGCUGCCAACCGCAGCCACAG ...............((((((((((..((((..((((....).)))...)))).---..))))))))))..((.(((((.....))))).)).. ( -32.50, z-score = -1.53, R) >consensus GGAUGGAAGGAGGGACGGUGGGCUGGUGGCUGGCACGCUGGUGGGCGGGCUGUUGUAGGUGCCUAGUUACAGUUGCUGCCAGCCGCAGUCGUA_ ....................(((((.((((((((.((((....))))(((..((((((........))))))..)))))))))))))))).... (-21.46 = -22.74 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:17 2011