| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,016,590 – 24,016,683 |
| Length | 93 |
| Max. P | 0.977373 |
| Location | 24,016,590 – 24,016,683 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 74.48 |
| Shannon entropy | 0.55373 |
| G+C content | 0.57907 |
| Mean single sequence MFE | -37.66 |
| Consensus MFE | -20.56 |
| Energy contribution | -21.86 |
| Covariance contribution | 1.30 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.977373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24016590 93 + 27905053 -------GCAGUUGUCUGCCUUUGGCCCUGGUUCUGCGCAACCGGAAACGGAAAUUGCGUAGCGCAGCCAAGUGCGUUGCUGUGGUGCAA--AAACGGCAGC -------(((.(((.((((....(((....)))(((((((((((....)))...)))))))).)))).))).)))((((((((.......--..)))))))) ( -40.70, z-score = -1.98, R) >droPer1.super_0 9920681 89 - 11822988 -------GCAGUUGUCUGCUUUUGGCCC------UGCGUAACCGGAAACGGAAAUUGCGUAGCGCAGCCAAGUGCGUUGCAGGGGUACCACCAAGAGGCAGC -------...(((((((.(((.((((((------((((((((((....)))...))))..((((((......))))))))))))...)))..)))))))))) ( -37.30, z-score = -1.93, R) >dp4.chr2 22725897 89 - 30794189 -------GCAGUUGUCUGCCUUUGGCCC------UGCGUAACCGGAAACGGAAAUUGCGUAGCGCAGCCAAGUGCGUUGCAGUGGUACCACCAAGAGGCAGC -------........((((((((((..(------..((((((((....)))...))))((((((((......)))))))).)..)..)))....))))))). ( -36.80, z-score = -2.08, R) >droAna3.scaffold_13340 22154242 91 + 23697760 -------GCAGUUGUCUGCCUUUGGCCCCGGUCCUGUGCAACCGGAAACGGAAAUUGCGUAGCGCAGCCAAGUGCGUUGCAGUGGUGCAA--AAA--GCAGC -------((((....)))).((((((....((.(((((((((((....)))...)))))))).)).))))))(((.(((((....)))))--...--))).. ( -33.30, z-score = -0.50, R) >droEre2.scaffold_4820 6442913 93 - 10470090 -------GCAGUUGUCUGCCUUUGGCCCUGGCUCUGCGCAACCGGAAACGGAAAUUGCGUAGCGCAGCCAAGUGCGUUGCUGUGGUGCAA--AAACGGCAGC -------(((.(((.((((....(((....)))(((((((((((....)))...)))))))).)))).))).)))((((((((.......--..)))))))) ( -43.20, z-score = -2.44, R) >droYak2.chr3R 6347953 93 - 28832112 -------GCAGUUGUCUGCCUUUGGCCCUGGUUCUGCGCAACCGGAAACGGAAAUUGCGUAGCGCAGCCAAGUGCGUUGCUGUGGUGCAA--AAACGGCAAC -------(((.(((.((((....(((....)))(((((((((((....)))...)))))))).)))).))).)))((((((((.......--..)))))))) ( -40.70, z-score = -2.41, R) >droSec1.super_22 629096 93 + 1066717 -------GCAGUUGUCUGCCUUUGGCCCUGGUUCUGCGCAACCGGAAACGGAAAUUGCGUAGCGCAGCCAAGUGCGUUGCUGUGGUGCAA--AAACGGCAGC -------(((.(((.((((....(((....)))(((((((((((....)))...)))))))).)))).))).)))((((((((.......--..)))))))) ( -40.70, z-score = -1.98, R) >droSim1.chr3R 23706142 93 + 27517382 -------GCAGUUGUCUGCCUUUGGCCCUGGUUCUGCGCAACCGGAAACGGAAAUUGCGUAGCGGAGCCAAGUGCGUUGCUGUGGUGCAA--AAACGGCAGC -------((((....)))).((((((.(((...(((((((((((....)))...))))))))))).))))))...((((((((.......--..)))))))) ( -40.60, z-score = -2.18, R) >droWil1.scaffold_181108 1252238 71 + 4707319 --------------------------GCAGUUGUUUCGC--CCGGAAACGGAAAUUGCGUAGCACAGCGAACCAGGUUGCUGGGGACCACAAAAAAAGA--- --------------------------...((.((..(..--(((....))).............((((((......)))))))..)).)).........--- ( -19.70, z-score = -0.44, R) >droMoj3.scaffold_6540 15118155 91 - 34148556 GUCGUUGUCUGUUCGCUGCGCUGCGCUGCGACAAGCAGCAACCGGAAACGGAAAUUGCGUAGCGCCGUUGCAUGGCUGGCAGCCAGCUAGC----------- ...((((.(((((.(((((((...(((((.....)))))..(((....))).....)))))))(((((...))))).))))).))))....----------- ( -43.60, z-score = -2.00, R) >consensus _______GCAGUUGUCUGCCUUUGGCCCUGGUUCUGCGCAACCGGAAACGGAAAUUGCGUAGCGCAGCCAAGUGCGUUGCUGUGGUGCAA__AAACGGCAGC .......((((....))))...............((((((((((....)))...))))((((((((......)))))))).................))).. (-20.56 = -21.86 + 1.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:14 2011