| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,006,555 – 24,006,681 |
| Length | 126 |
| Max. P | 0.863055 |
| Location | 24,006,555 – 24,006,681 |
|---|---|
| Length | 126 |
| Sequences | 3 |
| Columns | 128 |
| Reading direction | forward |
| Mean pairwise identity | 48.77 |
| Shannon entropy | 0.69835 |
| G+C content | 0.53458 |
| Mean single sequence MFE | -38.37 |
| Consensus MFE | -15.61 |
| Energy contribution | -14.97 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.863055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24006555 126 + 27905053 AGCAUGUACGCCUUUAGGGGUCGCACUCGACUCCCAUUGGUUAUCG-AGUAUGAACUUCAUACAUACAUAUUGCAGAAUUUGCUAGUGUCA-GCACUUGGCUGUCACAAGAGAUCUGCCUGUAGACCA .(((((((.(((..(.(((((((....))))))).)..))).....-.(((((.....))))).)))))...(((((.(((.((.(((.((-((.....)))).))).))))))))))..))...... ( -39.40, z-score = -2.00, R) >droEre2.scaffold_4784 2474366 110 - 25762168 AGCAUAAGCGCCUCUAGGGGCCGUGCCUGGUUCUGAUAGGUCUCCCCAGUAU----------GGGGAGAUAUGCUGUUUCUGCUUGUGUCAGCAGUCUUGCCGGCCGCAUUUGUAAAAUA-------- .(((...((.((....))(((((.((..(..(((((((.((((((((.....----------))))))))..((.......))...)))))).)..)..)))))))))...)))......-------- ( -42.60, z-score = -1.96, R) >droAna3.scaffold_12948 55997 99 + 692136 AGCAUACCCGCCUUUGGGGGCCGUGCCUGGAUCCCACUGGUUUCC--GGUAU----------CUUGCGAUCGUCAGCAUUUCCCACUGUCACGCGGUCGGCCUGCCGACUA----------------- .(((..((((....))))(((((((((.(((..((...))..)))--)))))----------.....((((((..(((........)))...)))))))))))))......----------------- ( -33.10, z-score = 0.13, R) >consensus AGCAUAAACGCCUUUAGGGGCCGUGCCUGGAUCCCAUUGGUUUCC__AGUAU__________CAUGCGAUAUGCAGAAUUUGCUAGUGUCA_GCGCUUGGCCGGCCGAAUA__U______________ .........(((....(((((((....)))))))....)))..............................(((.(((...(((((((.....)))).))).))).)))................... (-15.61 = -14.97 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:13 2011