| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,998,397 – 23,998,491 |
| Length | 94 |
| Max. P | 0.846940 |
| Location | 23,998,397 – 23,998,491 |
|---|---|
| Length | 94 |
| Sequences | 10 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 61.75 |
| Shannon entropy | 0.74227 |
| G+C content | 0.39224 |
| Mean single sequence MFE | -24.76 |
| Consensus MFE | -3.55 |
| Energy contribution | -3.33 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.80 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.14 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23998397 94 + 27905053 ---------------GUUCCAGCCACGCACAAAUACAAAUAUAUAAAUAUAUGUGUAUAUGUAGAUUUAGAUGUACGGCAGCUCU-AAUUAUAUAGAGCCACUGGAGCAC ---------------(((((((((........(((((.(((((....))))).)))))..(((.((....)).)))))).(((((-(......))))))...)))))).. ( -28.20, z-score = -3.94, R) >droSim1.chr3R 23693326 94 + 27517382 ---------------GUUCCAGCCACGCACAAAUACAAAUAUAUAAAUAUAUGUGUAUAUGUCGAUGUAGAUGUACGGCAGCUCU-AAUUAUAUAGAGCCACUGGAGCAC ---------------(((((((((.((.(((.(((((.(((((....))))).))))).)))))..(((....)))))).(((((-(......))))))...)))))).. ( -31.10, z-score = -4.32, R) >droSec1.super_22 617110 94 + 1066717 ---------------GUUCCAGCCACGCACAAAUACAAAUAUAUAAAUAUAUGUGUAUAUGUCGAUGUAGAUGUACGGCAGCUCU-AAUUAUAUAGAGCCACUGGAGCAC ---------------(((((((((.((.(((.(((((.(((((....))))).))))).)))))..(((....)))))).(((((-(......))))))...)))))).. ( -31.10, z-score = -4.32, R) >droYak2.chr3R 6336526 76 - 28832112 ---------------GUUCCAGCCACGCACAAAUACAAAUAUAUAUAUUUAUAUGUAU------------------GGCAGCUCU-AAUUAUAUAGAGCUACUGGAGCAC ---------------(((((((....((....(((((.(((........))).)))))------------------.))((((((-(......))))))).))))))).. ( -26.30, z-score = -5.42, R) >droEre2.scaffold_4820 6428138 94 - 10470090 ---------------GUUCCAGCCACGCACAAAUACAAAUAUAUUUAUAUGUGCAUAUGUGGAUGUGUGGAUGUGCGGCAGCUCU-AAUUAUAUAGAGCCACUGGAGCAC ---------------(((((((...((((((..((((....((((((((((....))))))))))))))..))))))...(((((-(......))))))..))))))).. ( -35.50, z-score = -3.79, R) >droAna3.scaffold_13340 22143457 109 + 23697760 GUUCCAACAACCGGGCAGCGACACACGCACAAACCUAUAUACAUUUAUAUGUGUAUAUAUGUAUGAGUGUACAAUGGGUCGCUCU-AAUUAUAUAGAGCUACUGGAGCAC ((((((...........(((.....)))....((((((.((((((((((((((....))))))))))))))..)))))).(((((-(......))))))...)))))).. ( -35.40, z-score = -3.64, R) >dp4.chr2 22714566 72 - 30794189 ---------------GUUCGUGCAACGCACAAAUA----UAUAUAUAUAUGUACAUAUGGGG------------------GCACU-AAUUAUAUAGAGCUACUGGAGCAC ---------------((((((((...))))..(((----(((....))))))......((..------------------((.((-(......))).))..)).)))).. ( -14.60, z-score = -0.93, R) >droPer1.super_0 9909397 71 - 11822988 ---------------GUUCGUGCAACCCACAAAUA----UAUAUAUAUAUGUACAUAUGGGG------------------GCGCU-AAUUAUAUAGAGCUACUG-AGCAC ---------------....((((..((((....((----((((....))))))....))))(------------------((.((-(......))).)))....-.)))) ( -17.40, z-score = -1.38, R) >droWil1.scaffold_181108 1240885 90 + 4707319 ---------------GUUCUAACAACAUCCACACACACACACACAUCGAGAGAC-UAUAUGUCGGUUUGUA----GGUUCGCUCUUAAUUAUAUAGAGCUACUGGAGCGC ---------------((((((...............((..(((.(((((.(...-....).))))).))).----.))..(((((.........)))))...)))))).. ( -19.00, z-score = -1.16, R) >droVir3.scaffold_13047 3681279 80 - 19223366 ---------------GCAACAAUAACACUCACACACUUACAGAAAGACACAACAUCGCAAAAUGGUCUGCA----GGGUCUGUCU-AAUUAUAUGAGCAC---------- ---------------............((((.......(((((.((((.((...........))))))...----...)))))..-.......))))...---------- ( -8.99, z-score = 0.63, R) >consensus _______________GUUCCAGCCACGCACAAAUACAAAUAUAUAUAUAUAUGUAUAUAUGU_GGUGUGGA____CGGCAGCUCU_AAUUAUAUAGAGCCACUGGAGCAC ................................................................................(((((.........)))))........... ( -3.55 = -3.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:12 2011