| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,989,539 – 23,989,649 |
| Length | 110 |
| Max. P | 0.816555 |
| Location | 23,989,539 – 23,989,649 |
|---|---|
| Length | 110 |
| Sequences | 10 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 84.10 |
| Shannon entropy | 0.34570 |
| G+C content | 0.50830 |
| Mean single sequence MFE | -35.25 |
| Consensus MFE | -21.36 |
| Energy contribution | -23.74 |
| Covariance contribution | 2.38 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23989539 110 + 27905053 UUCUCAACAUGGGC----CGGCAGCUGUGCGCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUGUGUUCAGCUCC ..(((.....))).----.((.(((((.(((((((((....)))).................(((((..((((((.((....))..))))))...))))).))))).))))))) ( -39.30, z-score = -2.69, R) >droEre2.scaffold_4820 6419141 110 - 10470090 UUCGCAACAUGGCC----CGGCAGCUGUGCGCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUGUGCUCAGCUCC ...((......)).----.((.(((((.(((((((((....)))).................(((((..((((((.((....))..))))))...))))).))))).))))))) ( -41.80, z-score = -3.16, R) >droYak2.chr3R 6327352 110 - 28832112 UUCUCAACAUGGCC----CGGCAGCUGUGCGCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUGUGCUCAGCUCC ..............----.((.(((((.(((((((((....)))).................(((((..((((((.((....))..))))))...))))).))))).))))))) ( -41.30, z-score = -3.52, R) >droSim1.chr3R 23684023 110 + 27517382 UUCUCAACAUGGCC----CGGCAGCUGUGCGCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUGUGUUCAGCUCC ..............----.((.(((((.(((((((((....)))).................(((((..((((((.((....))..))))))...))))).))))).))))))) ( -39.00, z-score = -2.95, R) >droVir3.scaffold_13047 3671966 104 - 19223366 ------UUCAGGCA----CAGCAGCUGUGCGCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAGCGGCUGCGGAAACGGAAGCCGUGUGUUGCGCUCUGUUUUUUUGU ------..((((((----(((...))))))(((((((....))))..................(((...((((((.((....))..)))))).))))))...)))......... ( -34.10, z-score = -1.03, R) >droGri2.scaffold_14830 4438746 104 + 6267026 ------UUCAGGCA----CGGCAGCUGUGCGCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGGGCUCCGUGUUUUUUU ------...(((((----(((.((((..((((.((((....))))........................((((((.((....))..))))))))))..)))))))))))).... ( -38.80, z-score = -2.63, R) >droWil1.scaffold_181108 1227960 106 + 4707319 UUCUCAAC-UGGCU----CGG---CUGUGCACAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCUUGUGUUGUACUCUGUUCACAAAA ........-(((..----(((---..(((((..((((....)))).................(((((....((((.((....))..))))))))).))))).)))..).))... ( -25.50, z-score = -1.00, R) >droAna3.scaffold_13340 22131927 106 + 23697760 UUCUCAAC--GGCUGC-CCGGCAGCUGUGCGCCAUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUCAGCUCU----- ......((--((((((-...))))))))((((...((....)))).................(((((..((((((.((....))..))))))...)))))....))...----- ( -33.90, z-score = -1.76, R) >droPer1.super_0 9899328 105 - 11822988 UUCUCCACUGGGCUCCUCCGGCAGCUGUGCGCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUCUG--------- ...........((((....((.(((((....)))))))...)))).................(((((..((((((.((....))..))))))...))))).....--------- ( -29.40, z-score = -0.61, R) >dp4.chr2 22704474 105 - 30794189 UUCUCCACUGGGCUCCUCCGGCAGCUGUGCGCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUCUG--------- ...........((((....((.(((((....)))))))...)))).................(((((..((((((.((....))..))))))...))))).....--------- ( -29.40, z-score = -0.61, R) >consensus UUCUCAACAUGGCC____CGGCAGCUGUGCGCAGUUCUAACGAGCAAAAACUAAUAAAUCCCCACGAAAAUGGCUGCGGAAACGGAAGCCGUGUGUUGUGUUCUGUUCAGCUCC ...........(((.....))).((...(((((((((....))))..................(((...((((((.((....))..)))))).))))))))...))........ (-21.36 = -23.74 + 2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:11 2011