Locus 11813

Sequence ID	dm3.chr3R
Location	23,983,399 – 23,983,491
Length	92
Max. P	0.937741

overview

Window 7

Location	23,983,399 – 23,983,491
Length	92
Sequences	4
Columns	92
Reading direction	forward
Mean pairwise identity	91.85
Shannon entropy	0.13299
G+C content	0.49313
Mean single sequence MFE	-25.18
Consensus MFE	-24.40
Energy contribution	-24.28
Covariance contribution	-0.12
Combinations/Pair	1.09
Mean z-score	-1.62
Structure conservation index	0.97
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.42
SVM RNA-class probability	0.937741
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 23983399 92 + 27905053
AGAGGCAGAGGCAGCGUAGAAAUGGCAACAACAAUGCCAUAUAGCCAGGCUAUAAGGAUGAAGACAUUAAGGCCCAGCAUGCGUUACCAACG
.........((.((((((...((((((.......))))))...((..((((.....((((....))))..))))..)).)))))).)).... ( -25.00, z-score =  -2.06, R)
>droSim1.chr3R 23677721 92 + 27517382
AAAGGCAGAGGCAGCGCUGAAAUGGCAACAACAAUGCCAUAUAGCCAGGCUAUAAGGAUGAAGACAUUAGGGCCCAGCAUGCGUUACCAACG
...((..((.(((..((((..((((((.......)))))).......((((.....((((....))))..)))))))).))).)).)).... ( -26.90, z-score =  -1.62, R)
>droSec1.super_22 602074 92 + 1066717
AAAGGCAGAGGCAGCGCUGAAAUGGCAACAACAAUGCCAUAUAGCCAGGCUAUAAGGAUGAAGACAUUAAGGCCCAGCAUGCGUUACCAACG
...((..((.(((..((((..((((((.......)))))).......((((.....((((....))))..)))))))).))).)).)).... ( -25.80, z-score =  -1.57, R)
>droYak2.chr3R 6321007 87 - 28832112
-----CACAGGCAGCGCAGAAAUGGCAACAACAAUGCCACACAGCCUGGCUAUAAGGAUGAAGACAUUAAGGCCCAGCAUGCGUUACUAACA
-----....((.((((((....(((((.......)))))....((..((((.....((((....))))..))))..)).)))))).)).... ( -23.00, z-score =  -1.25, R)
>consensus
AAAGGCAGAGGCAGCGCAGAAAUGGCAACAACAAUGCCAUAUAGCCAGGCUAUAAGGAUGAAGACAUUAAGGCCCAGCAUGCGUUACCAACG
.........((.(((((....((((((.......))))))...((..((((.....((((....))))..))))..))..))))).)).... (-24.40 = -24.28 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:09 2011