| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,982,985 – 23,983,089 |
| Length | 104 |
| Max. P | 0.580484 |
| Location | 23,982,985 – 23,983,089 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 95.24 |
| Shannon entropy | 0.09053 |
| G+C content | 0.37274 |
| Mean single sequence MFE | -24.81 |
| Consensus MFE | -23.56 |
| Energy contribution | -23.70 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23982985 104 + 27905053 -------GCGUGUGUGUUUGUGUUUGAGACUAACUUGAUGGCACAUCCUCCAUGGGGAUUUACAAGUGCUUAGUUCUAUGUCGCAAAAAAACGCUUUAAUAUUAUUAUACU -------((((.....((((((....(((...(((....((((((((((.....)))))......))))).))))))....))))))...))))................. ( -24.50, z-score = -1.13, R) >droSim1.chr3R 23677308 104 + 27517382 -------GCGUGUGUGUUUGUGUUUGAGACUAACUUGAUGGCACAUCCUCCAUGGGGAUUUACAAGUGCUUAGUUCUAUGUCGCAAAAAAACGCUUUAAUAUUAUUAUACU -------((((.....((((((....(((...(((....((((((((((.....)))))......))))).))))))....))))))...))))................. ( -24.50, z-score = -1.13, R) >droSec1.super_22 601661 104 + 1066717 -------GCGUGUGUGUUUGUGUUUGAGACUAACUUGAUGGCACAUCCUCCAUGGGGAUUUACAAGUGCUUAGUUCUAUGUCGCAAAAAAACGCUUUAAUAUUAUUAUACU -------((((.....((((((....(((...(((....((((((((((.....)))))......))))).))))))....))))))...))))................. ( -24.50, z-score = -1.13, R) >droYak2.chr3R 6320583 108 - 28832112 ---GCGUGUGUGUGUGUUUGUGUUUGAGACUAACUUGAUGGCACAUCCUCCAUGGGGAUUUACAAGUGCUUAGUUCUAUGUCGCAAAAAAACGCUUUAAUAUUAUUAUACU ---..(((((...(((((.((((((..(((.((((....((((((((((.....)))))......))))).))))....)))......))))))...)))))...))))). ( -26.00, z-score = -1.01, R) >droEre2.scaffold_4820 6412764 104 - 10470090 -------GCGUGUGUGUUUGUGUUUGAGACUAACUUGAUGGCACAUCCUCCAUGGGGAUUUACAAGUGCUUAGUUCUAUGUCGCAAAAAAACGCUUUAAUAUUAUUACACU -------..((((((((((...((((.(((.((((....((((((((((.....)))))......))))).))))....))).)))).))))))............)))). ( -25.50, z-score = -1.28, R) >droAna3.scaffold_13340 22125732 104 + 23697760 -------CUGUGUGUGUUUGUGUUUGAGACUAACUUGAUGGCACAUCCUCCAUGGGGAUUUACAAGUGCUUAGUUCUAUGUCGCAAAAAAACGCUUUAAUAUUAUUAUACU -------......((((((...((((.(((.((((....((((((((((.....)))))......))))).))))....))).)))).))))))................. ( -24.30, z-score = -1.35, R) >dp4.chr2 22697723 110 - 30794189 UGUGCGAGUGUGUGUGUUUGUAUUUGAGACUAACUUGAUGGCACAUCCUCUAUGGGGAUUUACAAGUGCUUAGUUCUAUGUCGCAAAAAA-CGCUUUAAUAUUAUUAUAUU ((((..(((((..((((((...((((.(((.((((....((((((((((.....)))))......))))).))))....))).)))))))-)))....)))))..)))).. ( -24.40, z-score = -0.59, R) >consensus _______GCGUGUGUGUUUGUGUUUGAGACUAACUUGAUGGCACAUCCUCCAUGGGGAUUUACAAGUGCUUAGUUCUAUGUCGCAAAAAAACGCUUUAAUAUUAUUAUACU .............((((((...((((.(((.((((....((((((((((.....)))))......))))).))))....))).)))).))))))................. (-23.56 = -23.70 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:09 2011