| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,980,764 – 23,980,874 |
| Length | 110 |
| Max. P | 0.809673 |
| Location | 23,980,764 – 23,980,874 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.34 |
| Shannon entropy | 0.36747 |
| G+C content | 0.36531 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -18.98 |
| Energy contribution | -19.18 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23980764 110 - 27905053 ------CCCCAUUUUUUGUCGUC----UUUUUUUUGGGCCGUAAAUUUAUGCUAACAGCUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUUGCUUUGCGGG ------.(((.............----.......((((((((((((((((((......(........).....))))))))))))).)))))........((((((....)).))))))) ( -26.00, z-score = -1.37, R) >droSim1.chr3R 23675070 110 - 27517382 ------CCCCAUUUUUUGUCGUC----UUUUUUUUGGGCCGUAAAUUUAUGCUAACAGCUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUUGCUUUGCGGG ------.(((.............----.......((((((((((((((((((......(........).....))))))))))))).)))))........((((((....)).))))))) ( -26.00, z-score = -1.37, R) >droSec1.super_22 599433 110 - 1066717 ------CCCCAUUUUUUGUCGUC----UUUUUUUUGGGCCGUAAAUUUAUGCUAACAGCUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUUGCUUUGCGGG ------.(((.............----.......((((((((((((((((((......(........).....))))))))))))).)))))........((((((....)).))))))) ( -26.00, z-score = -1.37, R) >droYak2.chr3R 6318252 114 + 28832112 ------CCCCAUUUUUUGUCGUCUAUUUUUUUUUUGGGCCGUAAAUUUAUGCUAACAGCUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUUGCUUUGCGGG ------.(((........................((((((((((((((((((......(........).....))))))))))))).)))))........((((((....)).))))))) ( -26.00, z-score = -1.33, R) >droEre2.scaffold_4820 6410555 110 + 10470090 -------CCCAUUUUUUGUCGGU---CUUUUUUUUGGGCCGUAAAUUUAUGCUAACAGCUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUUGCUUUGCGGG -------(((..........(((---((.......)))))((((((((((((......(........).....))))))))))))(((....))).....((((((....)).))))))) ( -27.90, z-score = -1.74, R) >droAna3.scaffold_13340 22123451 108 - 23697760 ------UCCCCAAUUUUGUG------CUUUUUUUUGGGCCGUAAAUUUAUGCUAACAGCUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUGUGUGCAGGCAUUUGCUUUGCGGG ------.((((((....(((------(.......((((((((((((((((((......(........).....))))))))))))).)))))..(((....))))))).....))).))) ( -28.40, z-score = -1.45, R) >droWil1.scaffold_181108 1219031 110 - 4707319 ----------UCGUAUUUUUUUUCUUUCUUUUUUUGGGCCGUAAAUUUAUGCUAACAGUUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUUACUUUGCGGA ----------(((((............((......))(((((((((((((((......(((......)))...))))))))))))(((....)))........)))........))))). ( -22.70, z-score = -1.82, R) >droMoj3.scaffold_6540 15084542 105 + 34148556 ------------CUGGUUUGUUGG--CGUUUUUUUGGGCCGUAAAUUUAUGCUAACAGUUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUCGUUUGGCCA- ------------.........(((--(.......((((((((((((((((((......(((......)))...))))))))))))).))))).........(((((....)))))))))- ( -26.70, z-score = -1.04, R) >droGri2.scaffold_14830 4429954 111 - 6267026 ---------UUCCUGUUUUUGUGGGUUUUUUUUUUGGGCCGUAAAUUUAUGCUAACAGUUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUCGUUUUGCUAA ---------..(((((....((((((((.......)))))((((((((((((......(((......)))...)))))))))))).......))).....)))))............... ( -26.10, z-score = -1.84, R) >droVir3.scaffold_13047 3662444 87 + 19223366 ------------CAGCUAUGUUGG--U-UUUUUUUGGGCCGUAAAUUUAUGCUAACAGUUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGC------------------ ------------((((...)))).--.-......((((((((((((((((((......(((......)))...))))))))))))).)))))..........------------------ ( -18.80, z-score = -1.18, R) >droPer1.super_0 9889677 120 + 11822988 ACCCUUUCUCUCUUUUAGUUUUGCUUCUUUUUUUUGGGCCGUAAAUUUAUGCUAACAGCUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUUGCUUUGCGGG .(((..............................((((((((((((((((((......(........).....))))))))))))).)))))........((((((....)).))))))) ( -25.70, z-score = -1.38, R) >dp4.chr2 22694977 120 + 30794189 ACCCUUUCUCUCUUUUAGUUUUGCUUCUUUUUUUUGGGCCGUAAAUUUAUGCUAACAGCUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUUGCUUUGCGGG .(((..............................((((((((((((((((((......(........).....))))))))))))).)))))........((((((....)).))))))) ( -25.70, z-score = -1.38, R) >consensus _______CCCAUUUUUUGUCGUG___CUUUUUUUUGGGCCGUAAAUUUAUGCUAACAGCUCUCCAUUGAAAAUGCAUAAAUUUAUGUGUUUACACUAUGUGCAGGCAUUUGCUUUGCGGG ..................................((((((((((((((((((.......((......))....))))))))))))).)))))........((((((....)))).))... (-18.98 = -19.18 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:08 2011