| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,977,992 – 23,978,094 |
| Length | 102 |
| Max. P | 0.655430 |
| Location | 23,977,992 – 23,978,094 |
|---|---|
| Length | 102 |
| Sequences | 9 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 93.15 |
| Shannon entropy | 0.13949 |
| G+C content | 0.34479 |
| Mean single sequence MFE | -17.27 |
| Consensus MFE | -11.71 |
| Energy contribution | -12.27 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23977992 102 - 27905053 GUAAAACGCAAAAUAAGACAAAAAGCACGAGUA--AGAGAGAAAUACCGUAAGCGAAAUGAGAAAUCAUUAGUAAGUAAAAAGCUUGUCAAUGUGUGUGUAAGU .....(((((......((((...((((((.(((--.........))))))..((..(((((....))))).)).........)))))))......))))).... ( -18.90, z-score = -3.13, R) >droSim1.chr3R 23672315 102 - 27517382 GUAAAACGCAAAGUAAGACAAAAAGCACGAGUA--AGAGAGAAAUACCGUAAGCGAAAUGAGAAAUCAUUAGUAAGUAAAAAGCUUGUCAGUGUGUGUGUAAGU .....(((((......((((...((((((.(((--.........))))))..((..(((((....))))).)).........)))))))......))))).... ( -18.90, z-score = -2.95, R) >droSec1.super_22 596712 102 - 1066717 GUAAAACGCAAAGUAAGACAAAAAGCACGAGUA--AGAGAGAAAUACCGUAAGCGAAAUGAGAAAUCAUUAGUAAGUAAAAAGCUUGUCAGUGUGUGUGUAAGU .....(((((......((((...((((((.(((--.........))))))..((..(((((....))))).)).........)))))))......))))).... ( -18.90, z-score = -2.95, R) >droYak2.chr3R 6315439 104 + 28832112 GUAAAACGCAAAGUAAGACAAAAAGCACGGGUAAGAGAGAGAAAUACCGUAAGCGAAAUGAGAAAUCAUUAGUAAGUAAAAAGCUUGUCAAUGUGUGUGUAAGU .....(((((......((((...(((((((................))))..((..(((((....))))).)).........)))))))......))))).... ( -20.69, z-score = -3.39, R) >droEre2.scaffold_4820 6407843 102 + 10470090 GUAAAACGCAAAGUAAGACAAAAAGCACGAGUA--AGAGAGAAAUACCGUAAGCGAAAUGAGAAAUCAUUAGUAAGUAAAAUGCUUGUCAAUGUGUGUGUAAGU .....(((((......((((...((((((.(((--.........))))))..((..(((((....))))).)).........)))))))......))))).... ( -18.70, z-score = -2.62, R) >droAna3.scaffold_13340 22120585 102 - 23697760 GUAAAAAGCAAAGUAAGACAAAAAGCACAAAUA--ACAGAGAAGUACCGUAAGCGAAAUGAGAAAUCAUUAGUAAGUAAAAAGCUUGUCAAUGUGUGUGUAAGU ........................(((((....--(((((.((((..((....)).(((((....)))))............)))).))..))).))))).... ( -17.00, z-score = -2.70, R) >dp4.chr2 22692367 104 + 30794189 GUAAAACGCAGAGUAAGACAAAAAGCACAAAUACCAGAGAGAAAUACCGUAAGCGAAAUGAGAAAUCAUUAGUAAGUAAAAAGCUUGCCAGUGUGUGAGUAAGU ((...((.....))...)).....(((((..................((....)).(((((....))))).((((((.....))))))...)))))........ ( -15.10, z-score = -1.78, R) >droPer1.super_0 9887092 104 + 11822988 GUAAAACGCAGAGUAAGACAAAAAGCACAAAUACCAGUGAGAAAUACCGUAAGCGAAAUGAGAAAUCAUUAGUAAGUAAAAAGCUUGCCAGUGUGUGAGUAAGU .....(((((..(((((.(......(((........))).....(((((....)).(((((....))))).)))........))))))...)))))........ ( -16.00, z-score = -1.72, R) >droWil1.scaffold_181108 1216163 103 - 4707319 GUAAAACGCAAAGUAAGACAAAAAGCACAAAUAACACAGA-AAAUACCGUAAGCGAAAUGAGAAAUCAUUAGUAAGUAAAAAGCAUGUAGAUGUGUGAGUAAAU ((...((.....))...))..............(((((..-...(((((....)).(((((....)))))................)))..)))))........ ( -11.20, z-score = -0.89, R) >consensus GUAAAACGCAAAGUAAGACAAAAAGCACGAGUA__AGAGAGAAAUACCGUAAGCGAAAUGAGAAAUCAUUAGUAAGUAAAAAGCUUGUCAAUGUGUGUGUAAGU ......((((......((((...(((.....................((....)).(((((....)))))............)))))))....))))....... (-11.71 = -12.27 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:07 2011