| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,864,117 – 8,864,233 |
| Length | 116 |
| Max. P | 0.817803 |
| Location | 8,864,117 – 8,864,233 |
|---|---|
| Length | 116 |
| Sequences | 7 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 64.33 |
| Shannon entropy | 0.72782 |
| G+C content | 0.52586 |
| Mean single sequence MFE | -33.84 |
| Consensus MFE | -9.78 |
| Energy contribution | -11.16 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.817803 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8864117 116 - 23011544 ACAUAAUGAUCAGGGCCACGCCGAUCAUCACGAAACUGAUAAUGAGCGGGCUCAAGUCGUGGAUGAAAUGGCAGCCAAACAAGGUGGUACACACAACCACCAGACCUGUCAUGAAC .(((.(((((..(((((.(((..((.((((......)))).))..))))))))..)))))..)))..(((((((........((((((.......))))))....))))))).... ( -36.90, z-score = -2.46, R) >droSim1.chr2L 8643109 116 - 22036055 ACAGAAUGAUCAAGGCCACGCCGAUCAUCACGAAACUGAUAGUGAGCGGGCUCAAAUCGUCAAUGAGAUGGCAGCCAAACAAGGUGGUACACACAACCACCAGACCCGUCAUGAAC ...((.(((((..(((...))))))))))............((((.((((.((.....((((......))))..........((((((.......)))))).)))))))))).... ( -32.30, z-score = -1.67, R) >droSec1.super_3 4338241 116 - 7220098 ACAGAAUGAUCAGGGCCACGCCGAUCAUCACGAAACUAAUAGUGAGCGGGCUCAAAUCGUCAAUGAGAUGGCAGCCAAACAAGGUGGUACACACAACCACCAGACCCGUCAUGAAC .((..(((((..(((((.(((......((((..........))))))))))))..)))))...)).(((((..(.....)..((((((.......))))))....)))))...... ( -32.40, z-score = -1.79, R) >droYak2.chr2L 11511234 116 - 22324452 UCAGUAUGAUCAGCGCCACGCCGAUCAUCACGCCAAUGAUGACGAACGUGGUCAAGUCGUCAAUCAGAUAGGUGCCGAACAAGGUGGUGCACACAACCACCACGCUAGCCGGAAAC ...(.((((((.(((...))).))))))).((((..(((((((((.(........)))))).))))....))))(((..(.((((((((........)))))).)).).))).... ( -35.30, z-score = -1.16, R) >droEre2.scaffold_4929 9457380 116 - 26641161 UCACGAUGAUCAGGGCCACGCCGAUCAUCACGAAGCUGACGACGAGUGUGCUCAACUUGUCGAUAAGAUAGCAACCGAACAAAGUGGUGCAGACAACCACUACAGCCACCAUGAAC (((.(((((((..(((...)))))))))).....((((.((((((((.......))))))))....................((((((.......)))))).)))).....))).. ( -36.80, z-score = -3.18, R) >droAna3.scaffold_12916 10528065 116 - 16180835 UGAGGACGAUGAGAGUCACGCCGAAGACGGCCAGAACCAAGGGCAGCGUCCCUAGGCCAGUAGCGGAUUGGGCACCACCCAACGUAGUCAUGGCCACCACGAAGCAUGCCAAGAUC ...((..(((....)))..((((....)))).....))...((((((.((....(((((...(((...((((.....)))).))).....))))).....)).)).))))...... ( -37.30, z-score = -1.22, R) >droWil1.scaffold_180772 190774 116 - 8906247 UCAACACCACGACUGUAGCCAGCACCACCAUCAGCACCACAGUUAGCAGACUGAAGGAGUAGACUAGGCAACCGCCAGCUAAAAUCGUACAUACUACCACAAUGGUGGCCAAUAUC ........((((...((((...........((.((.((.(((((....)))))..)).)).))...(((....))).))))...)))).....(((((.....)))))........ ( -25.90, z-score = -1.16, R) >consensus UCAGAAUGAUCAGGGCCACGCCGAUCAUCACGAAACUGAUAGUGAGCGGGCUCAAGUCGUCAAUGAGAUGGCAGCCAAACAAGGUGGUACACACAACCACCAGACCCGCCAUGAAC .....((((((..(((...))))))))).................((((.......(((((.....)))))...........((((((.......))))))....))))....... ( -9.78 = -11.16 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:08 2011