| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,936,832 – 23,936,938 |
| Length | 106 |
| Max. P | 0.996408 |
| Location | 23,936,832 – 23,936,938 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 72.39 |
| Shannon entropy | 0.47869 |
| G+C content | 0.44673 |
| Mean single sequence MFE | -30.04 |
| Consensus MFE | -18.56 |
| Energy contribution | -18.76 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.93 |
| SVM RNA-class probability | 0.996408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23936832 106 - 27905053 UUGUUUAAAGCGGAUCAAACCUCCAACAAUCCAUUCCUUUACAUUUAGCUCUGAUAAGCA-AGCUACCUCUUCUCGCAGUGUACCUGCACUGUGAGAGCGGGAACCU ........(((((((.............))))...............(((......))).-.))).(((.((((((((((((....)))))))))))).)))..... ( -30.32, z-score = -3.06, R) >droSim1.chr3R 23636461 104 - 27517382 UUGUUUAAAAACGUUAAAACAUCGAACUAUCACCUCUUU--CACUUAGUUCUGAUAAGCA-AGCUACCUUUUCUUGCAGUGUACAUGCACUGUGAGAGCGGGGACCU (((((((.....((....))...((((((..........--....))))))...))))))-)....(((.((((..((((((....))))))..)))).)))..... ( -28.54, z-score = -2.72, R) >droSec1.super_22 555468 104 - 1066717 UUGUUUAAAGACGUUCAAACAUCGAACUAUCACCUCUUU--CACUUAGUUCUGAUAAGCA-AGCUACCUUUUCUUGCAGUGUACAUGCACUGUGAGAGCGGGGACCU (((((((..((.((....)).))((((((..........--....))))))...))))))-)....(((.((((..((((((....))))))..)))).)))..... ( -29.74, z-score = -2.55, R) >droYak2.chr3R 6272823 98 + 28832112 ---------CUUUUUGCAAGGGCAAACCAUGCUCUCCUUAUCAUUUAGUUUUGGUAAAGACAGCUAACUUUUCUUGCAGUGCACCUGCACCGUGAGUGCGGGAACCU ---------....(((((((((....))..(((.((.((((((........)))))).)).)))........)))))))....((((((.(....)))))))..... ( -29.70, z-score = -1.74, R) >droEre2.scaffold_4820 6363463 95 + 10470090 ---------CUUUUUACCAGGGCAAA-CAAACCCUCCUU-UCAUUUAG-UUCGGUUAGGAAAGCCCCCUUUUCUUGCAGUGCACCUGCACUGUGAGAGCGGGAACCU ---------..........((((...-(.((((...((.-......))-...)))).)....))))(((.((((..((((((....))))))..)))).)))..... ( -31.90, z-score = -2.56, R) >consensus UUGUUUAAACACGUUAAAACAUCAAACCAUCCCCUCCUU__CAUUUAGUUCUGAUAAGCA_AGCUACCUUUUCUUGCAGUGUACCUGCACUGUGAGAGCGGGAACCU ..................................................................(((.((((((((((((....)))))))))))).)))..... (-18.56 = -18.76 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:50:00 2011