| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,918,860 – 23,918,954 |
| Length | 94 |
| Max. P | 0.509394 |
| Location | 23,918,860 – 23,918,954 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 93.46 |
| Shannon entropy | 0.14468 |
| G+C content | 0.35265 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -17.85 |
| Energy contribution | -17.61 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23918860 94 - 27905053 AGUUGAUAAUAUAAAUGGAAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGCAGAGGACAUUUGUUCUGUUUUGUGUUAUGAGCCGAG- .(((.((((((((((.........((((((((..(((.....))).)))))).)).((((((.(....).)))))))))))))))).)))....- ( -21.00, z-score = -1.58, R) >droSim1.chr3R 23619013 94 - 27517382 AGUUGAUAAUAUAAAUGGAAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGCAGAGGACAUUUGUUCUGUUUUGUGUUAUGAGCCGAG- .(((.((((((((((.........((((((((..(((.....))).)))))).)).((((((.(....).)))))))))))))))).)))....- ( -21.00, z-score = -1.58, R) >droSec1.super_22 537673 94 - 1066717 AGUUGAUAAUAUAAAUGGAAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGCAGAGGACAUUUGUUCUGUUUUGUGUUAUGAGCCGAG- .(((.((((((((((.........((((((((..(((.....))).)))))).)).((((((.(....).)))))))))))))))).)))....- ( -21.00, z-score = -1.58, R) >droEre2.scaffold_4820 6343429 94 + 10470090 AGUUGAUAAUGUAAAUGGAAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGCAGAGGACAUUUGUUCUGUUUUGUGUUAUGAGCCGAG- ..........(((((((......(....).....))))))).....(((((....((((.((((((.......)))))).))))..)))))...- ( -21.20, z-score = -1.39, R) >droAna3.scaffold_13340 22060608 94 - 23697760 AGUUGAUAAUAUAAAUGGAAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGCAGAGGACAUUUGUUCUGUUUUGUGUUAUGAGCCGAG- .(((.((((((((((.........((((((((..(((.....))).)))))).)).((((((.(....).)))))))))))))))).)))....- ( -21.00, z-score = -1.58, R) >dp4.chr2 22630474 94 + 30794189 AGUUGAUAAUAUAAAUGGAAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGCAAAGGACAUUUGUUCUGUUUUGUGUUAUGAGCCGAG- .((((((........(....)..(....)))))))...........(((((.....(((((((((....)))))...)))).....)))))...- ( -20.40, z-score = -1.49, R) >droPer1.super_0 9823776 94 + 11822988 AGUUGAUAAUAUAAAUGGAAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGCAAAGGACAUUUGUUCUGUUUUGUGUUAUGAGCCGAG- .((((((........(....)..(....)))))))...........(((((.....(((((((((....)))))...)))).....)))))...- ( -20.40, z-score = -1.49, R) >droWil1.scaffold_181108 1149613 95 - 4707319 AGUUGAUAAUAUAAAUGGAAAAACGAAAGGUCGACAUUUAUUGUGGGUCUUUAUCUGCAAAGGACAUUUGUUCUCUUUGGUGUUAUGAGUCGGAG .(((.(((((((....(((......((((..(.(((.....))).)..)))).........((((....)))))))...))))))).)).).... ( -18.70, z-score = -0.53, R) >droVir3.scaffold_13047 3576798 94 + 19223366 AGUUGAUAAUAUAAAUGGAAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGUAAAGGACAUUUGUUCUGCUCCAUGUAACGAGCUGGG- ..(((((((.(((((((......(....).....))))))).........)))))))...(((((....)))))((((........))))....- ( -17.50, z-score = -0.33, R) >droMoj3.scaffold_6540 15007560 94 + 34148556 AGUUGAUAAUAUAAAUGGGAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGCAGAAUACAUUUGUUCCGUGCCGUGUUAUGAACUGGG- ((((.(((((((..(((((.....((((((((..(((.....))).)))))).)).(((((.....))))))))))...))))))).))))...- ( -21.20, z-score = -1.22, R) >droGri2.scaffold_14830 4359985 94 - 6267026 AGUUGAUAAUAUAAAUGGAAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGCAAAGGACAUUUGUUCUGUUUCGUGUUAUGAACUGGG- ((((.((((((((((((((.....((((((((..(((.....))).)))))).)).(((((.....)))))))))))).))))))).))))...- ( -21.50, z-score = -2.09, R) >consensus AGUUGAUAAUAUAAAUGGAAAAACGAAAGGUCGACAUUUAUUAUGAGGCUUUAUCAGCAGAGGACAUUUGUUCUGUUUUGUGUUAUGAGCCGAG_ .(((.((((((((((((((.....((((((((..(((.....))).)))))).)).(((((.....)))))))))))).))))))).)))..... (-17.85 = -17.61 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:56 2011