| Sequence ID | dm3.chr2L |
|---|---|
| Location | 804,787 – 804,904 |
| Length | 117 |
| Max. P | 0.701617 |
| Location | 804,787 – 804,904 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.24 |
| Shannon entropy | 0.18782 |
| G+C content | 0.45707 |
| Mean single sequence MFE | -37.31 |
| Consensus MFE | -22.42 |
| Energy contribution | -22.86 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 804787 117 + 23011544 AGCCCUCUUAACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGAUUCCCUGGCAGGA---AAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCCAGCGUAUCAA .((((((((....))))))))..........(((.(((.....))).)))........(((.(.(((((..((---(((((((....)))))))))(((....))).))))).).))).. ( -40.20, z-score = -3.28, R) >droSim1.chr2L 807046 117 + 22036055 AGCCCUCUUAACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGACUCCCAGGCAGGA---AAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCCAGCGUAUCAA .((............(((((((((.......(((.(((.....))).)))......))))))))).(((..((---(((((((....)))))))))(((....))).))).))....... ( -40.22, z-score = -3.46, R) >droSec1.super_14 775308 117 + 2068291 AGCCCUCUUAACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGAUUCCCAGGCAGGA---AAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCCAGCGUAUCAA .((............(((((((((.......(((.(((.....))).)))......))))))))).(((..((---(((((((....)))))))))(((....))).))).))....... ( -37.82, z-score = -2.87, R) >droYak2.chr2L 788157 118 + 22324452 AGCCCUCUUCACAAAAAGAGUCUUUAAAGA--UUCAAGAACGUGUUUGAGGCAAACAGGAUUCCCUGCCAGGAGGAAAUGGCCGGAAGUUCAUUUCGUGAAAGCUUCGCCAGCGUAUCAA .................((((((....)))--)))..((((((...((((((...((((....)))).......((((((..(....)..))))))......))))))...)))).)).. ( -33.40, z-score = -1.29, R) >droEre2.scaffold_4929 858884 113 + 26641161 AGCCCUCUUUACAAAGGGCGUCUUUAAAAA--CUCAACAAUGUGUUUGAG-CAAACAGGAUUCCU-GCCAGGA---AAUGGACGGAAGUUCAUUUCGUGAAAGCUGCGCCAGCGUAUCAG .(((((........)))))........(((--(.((....)).)))).((-(...((((...)))-).((.((---(((((((....))))))))).))...)))(((....)))..... ( -34.90, z-score = -2.23, R) >consensus AGCCCUCUUAACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGAUUCCCAGGCAGGA___AAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCCAGCGUAUCAA .((((((((....))))))))..................((((...((.(((.........(((......)))...(((((((....)))))))........))).))...))))..... (-22.42 = -22.86 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:00 2011