| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,906,735 – 23,906,828 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 23,906,735 – 23,906,828 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 74.64 |
| Shannon entropy | 0.54616 |
| G+C content | 0.28828 |
| Mean single sequence MFE | -18.63 |
| Consensus MFE | -8.33 |
| Energy contribution | -8.93 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 23906735 93 + 27905053 ---------UUGUUUUUGCAG---CGUGUAAAAAUGUGAAUUAUUUAUGUUAAUGAUUCGGUGAUUAUUUCAUGAUUUAGUUUUACAUGCCUAUAAUUGCUCAUU ---------..((..(((..(---(((((((((...(((((((((......)))))))))((((.....)))).......))))))))))...)))..))..... ( -20.20, z-score = -2.00, R) >droSim1.chr3R 23606746 93 + 27517382 ---------UUGUUUUUGCCG---CGUGUAAAAAUGUGAAUUAUUUAUGUUAAUGAUUCGGUGAUUAUUUCAUGAUUUAGUUUUACAUGCCUAUAAUUGCUCAUU ---------..((..(((..(---(((((((((...(((((((((......)))))))))((((.....)))).......))))))))))...)))..))..... ( -20.20, z-score = -2.26, R) >droSec1.super_22 524420 93 + 1066717 ---------UUGUUUUUGCCG---CGUGUAAAAAUGUGAAUUAUUUAUGUUAAUGAUUCGGUGAUUAUUUCAUGAUUUAGUUUUACAUGCCUAUAAUUGCUCAUU ---------..((..(((..(---(((((((((...(((((((((......)))))))))((((.....)))).......))))))))))...)))..))..... ( -20.20, z-score = -2.26, R) >droYak2.chr3R 6241538 94 - 28832112 ---------UUGUUUUUGCCGG--CGUGUAAAAAUGUGAAUUAUUUAUGUUAAUGAUUCGGUGAUUAUUUCAUGAUUUAGUUUUACAUGCCUAUAAUUGCUCAUU ---------..((..(((..((--(((((((((...(((((((((......)))))))))((((.....)))).......)))))))))))..)))..))..... ( -24.70, z-score = -3.60, R) >droEre2.scaffold_4820 6330918 93 - 10470090 ---------UUGUUUUUGCCA---CGUGUAAAAAUGUGAAUUAUUUAUGUUAAUGAUUCGGUGAUUAUUUCAUGAUUUAGUUUUACAUGCCUAUAAUUGCUCAUU ---------..((((((((..---...))))))))..((((((((......))))))))((..(((((..((((...........))))...)))))..)).... ( -17.70, z-score = -1.48, R) >droAna3.scaffold_13340 22047868 102 + 23697760 ---UUGUUCGCAAUGCCGACGCUGCGUGUAAAAAUGUGAAUUAUUUAUGUUAAUGAUUCGGUGAUUAUUUCAUGAUUUAGUUUUACAUGCCUAUAAUUGCUCAUU ---......(((((((....)).((((((((((...(((((((((......)))))))))((((.....)))).......)))))))))).....)))))..... ( -24.00, z-score = -1.81, R) >dp4.chr2 22615846 96 - 30794189 ---------UUGUUUUUGCGACUCCGUGUAAAAAUGUGAAUUAUUUAUGUUAAUGAUUUGGUGAUUAUUUCAUGAUUUAGUUUUACAUGCCUAUAAUUGCUCAUU ---------..(((((((((......)))))))))..((((((((......))))))))((..(((((..((((...........))))...)))))..)).... ( -16.30, z-score = -0.91, R) >droPer1.super_0 9808466 96 - 11822988 ---------UUGUUUUUGCGACUCCGUGUAAAAAUGUGAAUUAUUUAUGUUAAUGAUUUGGUGAUUAUUUCAUGAUUUAGUUUUACAUGCCUAUAAUUGCUCAUU ---------..(((((((((......)))))))))..((((((((......))))))))((..(((((..((((...........))))...)))))..)).... ( -16.30, z-score = -0.91, R) >droVir3.scaffold_13047 3562978 104 - 19223366 UUCUUGUUUUUGGGUGUGACGU-AUGCAUAUAAGUUUGAAUUAUUUACGUUAAUGAUUGUGUGAUUAAUUUAUCAUUAGGUUCUACAUGACACUAAUUGCUCAUU .....((.....(((((.(.((-(.((...(((...(((((((.(((((..........))))).)))))))...))).))..))).).)))))....))..... ( -16.40, z-score = 0.56, R) >droMoj3.scaffold_6540 14992387 96 - 34148556 --------UUUUUCUUUUACAU-AUGUAUAAAGUCUUGAAUUAUGUACGCUAAUGACUGGGUGAUUAAUUCAUCAUUAAGUUGUACAUGCCAGUAAUUGCUCAUU --------.....(((((((..-..))).))))...(((...((((((((((((((.(((((.....)))))))))).)).)))))))((.(....).))))).. ( -16.60, z-score = -0.45, R) >droGri2.scaffold_14830 4345550 102 + 6267026 --AUUGUUUUUGAGUGCUACAU-AUGUAUAUGGGCUUUAAUUAUUUACACUUAUAAUUGGGUGAUUAAUUCAUCAUUAAGUUGUACAUGCCAGUAAUUGAUCAUU --........(((..(((.(((-(....))))))).(((((((((..((..(((((((.(((((.....)))))....)))))))..))..)))))))))))).. ( -18.90, z-score = -0.38, R) >anoGam1.chr2R 6614275 90 - 62725911 ---------GUGUACUUGCAC---UAGUUAACAUCAUACCUUACUGAUGAUAUAGGUUGGACAUUUUCCCUAUCGU---ACUUUAAAUCUCUGUAAGCAUCCUUU ---------.....((((((.---...(((((((((........))))).....(((.(((.....)))..)))..---...)))).....))))))........ ( -12.00, z-score = 0.28, R) >consensus _________UUGUUUUUGCCG___CGUGUAAAAAUGUGAAUUAUUUAUGUUAAUGAUUCGGUGAUUAUUUCAUGAUUUAGUUUUACAUGCCUAUAAUUGCUCAUU ........................(((((((((...(((((((((......)))))))))((((.....)))).......)))))))))................ ( -8.33 = -8.93 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:52 2011