| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,835,287 – 23,835,386 |
| Length | 99 |
| Max. P | 0.932147 |
| Location | 23,835,287 – 23,835,386 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 89.96 |
| Shannon entropy | 0.21243 |
| G+C content | 0.39625 |
| Mean single sequence MFE | -26.47 |
| Consensus MFE | -23.47 |
| Energy contribution | -23.20 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.932147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23835287 99 + 27905053 -------------ACAAUGGGAG---A--ACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACU -------------(((((((((.---.--..((((((.(((((..........))))).(((((((((........))))))))).....)))))))))))))))............ ( -25.20, z-score = -2.39, R) >droSim1.chr3R 23537193 99 + 27517382 -------------ACAAUGGGAA---A--ACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACU -------------(((((((((.---.--..((((((.(((((..........))))).(((((((((........))))))))).....)))))))))))))))............ ( -25.20, z-score = -2.58, R) >droSec1.super_22 458112 99 + 1066717 -------------ACAAUGGGAA---A--ACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACU -------------(((((((((.---.--..((((((.(((((..........))))).(((((((((........))))))))).....)))))))))))))))............ ( -25.20, z-score = -2.58, R) >droYak2.chr3R 6168181 101 - 28832112 -------------ACAAUGGGAA---ACAACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACU -------------(((((((...---.)...((((((.(((((..........))))).(((((((((........))))))))).....))))))...))))))............ ( -24.80, z-score = -2.46, R) >droEre2.scaffold_4820 6264192 99 - 10470090 -------------ACAAUGGGAA---A--ACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACU -------------(((((((((.---.--..((((((.(((((..........))))).(((((((((........))))))))).....)))))))))))))))............ ( -25.20, z-score = -2.58, R) >droAna3.scaffold_13340 21973951 109 + 23697760 CGGACCGUG---CACAAUGGGAA---A--ACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCCCAGCUUUUGGCCAUAAGAAACACGCUGCUUUUAUUGUUUUUAAUCAACU ....((((.---....))))(((---(--((((((((.(((((..........))))).(((((((((........))))))))).....))))).......)))))))........ ( -27.91, z-score = -1.12, R) >dp4.chr2 22543852 111 - 30794189 -UGUCCGUGGCUCACAAUGGGAA---A--ACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACU -....((((.(((.....)))..---.--.))))(((....)))((((((((..((((.(((((((((........))))))))).))...))....))))))))............ ( -26.90, z-score = -0.96, R) >droPer1.super_0 9736949 111 - 11822988 -UGUCCGUGGCUCACAAUGGGAA---A--ACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACU -....((((.(((.....)))..---.--.))))(((....)))((((((((..((((.(((((((((........))))))))).))...))....))))))))............ ( -26.90, z-score = -0.96, R) >droWil1.scaffold_181108 1049745 111 + 4707319 -CCCCGGCACACAACAAUGGGAA---A--ACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACU -...........((((((((((.---.--..((((((.(((((..........))))).(((((((((........))))))))).....))))))))))))))))........... ( -26.40, z-score = -1.31, R) >droVir3.scaffold_13047 3482362 104 - 19223366 -------------ACAAUGGGAGCAGAGCACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACAUGCUGUUUUUAUUGUUUUUAAUCAACU -------------(((((((((((((........((....))(((........)))...(((((((((........))))))))).......)))))))))))))............ ( -28.90, z-score = -2.35, R) >droMoj3.scaffold_6540 14903513 104 - 34148556 -------------ACAAUGGGAGCGGAGCACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGGAACACGCUGUUUUUAUUGUUUUUAAUCAACU -------------(((((((((((((........((....))(((........)))...(((((((((........))))))))).......)))))))))))))............ ( -28.20, z-score = -2.05, R) >droGri2.scaffold_14830 4269472 105 + 6267026 -----------CAGCUGUGUGGA-GCAGCACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCUAUAAGAAACAUGCUGUUUUUAUUGUUUUUAAUCAACU -----------..((((((((..-....))))))))........((((((((..((...(((((((((........)))))))))......))....))))))))............ ( -26.80, z-score = -0.52, R) >consensus _____________ACAAUGGGAA___A__ACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACU .............(((((((((.........((((((.(((((..........))))).(((((((((........))))))))).....)))))))))))))))............ (-23.47 = -23.20 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:45 2011