| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,856,436 – 8,856,527 |
| Length | 91 |
| Max. P | 0.618676 |
| Location | 8,856,436 – 8,856,527 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 86.73 |
| Shannon entropy | 0.27983 |
| G+C content | 0.36865 |
| Mean single sequence MFE | -15.99 |
| Consensus MFE | -11.27 |
| Energy contribution | -11.69 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8856436 91 + 23011544 AUCUGCGCAACAAGAUCGCAAUUAAUUCACGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACUUCUUUU-CAU--------------- (((((((......................)))))))........(((((.(((((((..............)))))))))))).....-...--------------- ( -16.99, z-score = -2.52, R) >droAna3.scaffold_12916 10520670 107 + 16180835 AUCGCCGCAACAAGAUCGCAAUUAAUUCGCGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACUUCGCCCAGCAACCAAGCCUCCAUGC ......(((.......(((.........))).(((.........(((((.(((((((..............))))))))))))......((......)).))).))) ( -17.24, z-score = -0.31, R) >droPer1.super_5 1627531 91 - 6813705 AUCUCUGCAACAAGAUCGCAAUUAAUUCACGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACUUCUUUU-UAA--------------- ...(((((......................))))).........(((((.(((((((..............)))))))))))).....-...--------------- ( -13.89, z-score = -1.73, R) >dp4.chr4_group5 1656170 91 - 2436548 AUCUCUGCAACAAGAUCGCAAUUAAUUCACGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACUUCUUUU-UAA--------------- ...(((((......................))))).........(((((.(((((((..............)))))))))))).....-...--------------- ( -13.89, z-score = -1.73, R) >droSim1.chr2L 8635338 91 + 22036055 AUCUGCGCAACAAGAUCGCAAUUAAUUCACGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACUUCUUUU-CAU--------------- (((((((......................)))))))........(((((.(((((((..............)))))))))))).....-...--------------- ( -16.99, z-score = -2.52, R) >droSec1.super_3 4330465 91 + 7220098 AUCUGCGCAACAAGAUCGCAAUUAAUUCACCCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACUUCUUUU-CAU--------------- ...((((.........))))....((((....))))........(((((.(((((((..............)))))))))))).....-...--------------- ( -12.94, z-score = -1.47, R) >droYak2.chr2L 11503155 91 + 22324452 AUCUGCGCAACAAGAUCGCAAUUAAUUCACGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACUUCUUUU-CAU--------------- (((((((......................)))))))........(((((.(((((((..............)))))))))))).....-...--------------- ( -16.99, z-score = -2.52, R) >droEre2.scaffold_4929 9449632 91 + 26641161 AUCUGCGCAACAAGAUCGCAAUUAAUUCACGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACUUCUUUU-CAU--------------- (((((((......................)))))))........(((((.(((((((..............)))))))))))).....-...--------------- ( -16.99, z-score = -2.52, R) >droWil1.scaffold_180772 178026 93 + 8906247 AUCUUUGCAACAAGAUCGCAAUUAAUUCACGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACAUCUUUC-UCGUC------------- .........((.(((((((...........))))............(((.(((((((..............)))))))))).....))-).)).------------- ( -13.24, z-score = -0.96, R) >droMoj3.scaffold_6500 10853540 104 + 32352404 AGCUGGGCAACAAGAUCGCAAUUAAUUCAUGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACAAUAUUUUU-GCACCUUUUUUGCCUU-- ....((((((.(((.(((((.........)))))............(((((((((((..............)))))))..........-)))))))..)))))).-- ( -19.54, z-score = -0.91, R) >droGri2.scaffold_15126 7873573 99 + 8399593 AACUGCGCAACAAGAUCGCAAUUAAUUCACGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACUUUUCUU-G---CCUUU--ACCUU-- ..........(((((((((...........))))..........(((((.(((((((..............)))))))))))).))))-)---.....--.....-- ( -17.14, z-score = -1.73, R) >droVir3.scaffold_12723 4868802 101 + 5802038 AUCUGCGCAACAAGAUCGCAAUUAAUUCACGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACAUUUCUU-UUUCCCUUU--GCUC--- (((((((......................)))))))..........(((.(((((((..............)))))))))).......-.........--....--- ( -15.99, z-score = -1.31, R) >consensus AUCUGCGCAACAAGAUCGCAAUUAAUUCACGCGGAUAAAUCUUCAAGUGCUAACUACAUGACAACAACAAAGUAGUUACACUUCUUUU_CAU_______________ ...............((((...........))))..........(((((.(((((((..............))))))))))))........................ (-11.27 = -11.69 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:06 2011