| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,823,336 – 23,823,441 |
| Length | 105 |
| Max. P | 0.797711 |
| Location | 23,823,336 – 23,823,441 |
|---|---|
| Length | 105 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 93.09 |
| Shannon entropy | 0.13820 |
| G+C content | 0.35695 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -19.27 |
| Energy contribution | -19.37 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23823336 105 + 27905053 UUUUUGUGCUU----GAAA-UUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCCACUUGGACACACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGCCAG-----AGCAGCGCAG ....((((((.----....-....((((..((((((.............))))))..))))....((((((.((.(((........)))))...))))))-----...)))))). ( -24.42, z-score = -1.96, R) >droSim1.chr3R 23525283 105 + 27517382 UUUUUGUGCUU----GAAA-UUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCCACUUGGACACACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGCCAG-----AGCAGCGCAG ....((((((.----....-....((((..((((((.............))))))..))))....((((((.((.(((........)))))...))))))-----...)))))). ( -24.42, z-score = -1.96, R) >droSec1.super_22 446256 105 + 1066717 UUUUUGUGCUU----GAAA-UUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCCACUUGGACACACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGCCAG-----AGCAGCGCAG ....((((((.----....-....((((..((((((.............))))))..))))....((((((.((.(((........)))))...))))))-----...)))))). ( -24.42, z-score = -1.96, R) >droYak2.chr3R 6156045 106 - 28832112 UUUUUGUGCUU----GAAAAUUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCCACUUGGACACACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGCCAG-----AGUAGCGCAG ....((((((.----.........((((..((((((.............))))))..)))).((.((((((.((.(((........)))))...))))))-----.)))))))). ( -25.02, z-score = -2.21, R) >droEre2.scaffold_4820 6248467 105 - 10470090 UUUUUGUGCUU----GAAA-UUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCCACUUGGACACACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGCCAG-----AGUAGCGCAA ...(((((((.----....-....((((..((((((.............))))))..)))).((.((((((.((.(((........)))))...))))))-----.))))))))) ( -25.12, z-score = -2.29, R) >droAna3.scaffold_13340 21961599 105 + 23697760 UUUUUGUGCUU----GAAA-UUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCCACUUGGACACACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGCCA-----UACUAGCACAG ....((((((.----(...-....((((..((((((.............))))))..)))).....(((((.((.(((........)))))...)))))-----..).)))))). ( -21.92, z-score = -2.54, R) >dp4.chr2 22531267 110 - 30794189 UUUUUGUGCUU----GAAA-UUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCCACUUGGACACACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGCCAGAGAGUAGCAGCACAG ....((((((.----(..(-((((((((..((((((.............))))))..))))....((((((.((.(((........)))))...)))))))))))..))))))). ( -26.42, z-score = -2.22, R) >droPer1.super_0 9724399 110 - 11822988 UUUUUGUGCUU----GAAA-UUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCGACUUGGACACACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGCCAGAGAGUAGCAGCACAG ....(((((((----((((-(((((((....))))))...........)))))))..((.((.(.((((((.((.(((........)))))...)))))).).))..))))))). ( -22.80, z-score = -0.91, R) >droWil1.scaffold_181108 1035501 105 + 4707319 UUUUUGUGCUU----GAAA-UUUUUCCACAUGAAAAAUUAUUUGAUUUAUUUCCACUUGGACACACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGCCAG-----AGUCGCACAG ....(((((..----..((-((((((.....))))))))....((((....(((....)))....((((((.((.(((........)))))...))))))-----))))))))). ( -22.70, z-score = -2.14, R) >droMoj3.scaffold_6540 14884000 105 - 34148556 UUUUUGUAUUU-----GAAAUUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCCACUUGGACAAACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGGCAG-----AGCCACACAG ....(((....-----....(((.((((..((((((.............))))))..)))).))).((((.((((.(((.............))).))))-----.)))).))). ( -20.74, z-score = -1.64, R) >droVir3.scaffold_13047 3467192 110 - 19223366 UUUUUGUUUUUACUGGGAAAUUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCCACUUGGACAAACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGGCAG-----AGCCACACAG ..(((((((......((((((((((((....))))))...........))))))....))))))).((((.((((.(((.............))).))))-----.))))..... ( -23.82, z-score = -2.10, R) >consensus UUUUUGUGCUU____GAAA_UUUUUCCACAUGGAAAAUUAUUUGAUUUAUUUCCACUUGGACACACUGGCACUGCAAUAAAUCUUCGUUCAAUAUGCCAG_____AGCAGCACAG ....(((((...............((((..((((((.............))))))..))))....((((((.((.(((........)))))...)))))).........))))). (-19.27 = -19.37 + 0.09)
| Location | 23,823,336 – 23,823,441 |
|---|---|
| Length | 105 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 93.09 |
| Shannon entropy | 0.13820 |
| G+C content | 0.35695 |
| Mean single sequence MFE | -27.37 |
| Consensus MFE | -20.11 |
| Energy contribution | -20.11 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23823336 105 - 27905053 CUGCGCUGCU-----CUGGCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAA-UUUC----AAGCACAAAAA .((.(((((.-----(((((((..((((......)))).....))))))).)).((((.(((((((.............))))))).))))....-....----.))).)).... ( -27.32, z-score = -2.07, R) >droSim1.chr3R 23525283 105 - 27517382 CUGCGCUGCU-----CUGGCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAA-UUUC----AAGCACAAAAA .((.(((((.-----(((((((..((((......)))).....))))))).)).((((.(((((((.............))))))).))))....-....----.))).)).... ( -27.32, z-score = -2.07, R) >droSec1.super_22 446256 105 - 1066717 CUGCGCUGCU-----CUGGCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAA-UUUC----AAGCACAAAAA .((.(((((.-----(((((((..((((......)))).....))))))).)).((((.(((((((.............))))))).))))....-....----.))).)).... ( -27.32, z-score = -2.07, R) >droYak2.chr3R 6156045 106 + 28832112 CUGCGCUACU-----CUGGCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAAUUUUC----AAGCACAAAAA .((.(((((.-----(((((((..((((......)))).....))))))).)).((((.(((((((.............))))))).)))).........----.))).)).... ( -27.02, z-score = -2.33, R) >droEre2.scaffold_4820 6248467 105 + 10470090 UUGCGCUACU-----CUGGCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAA-UUUC----AAGCACAAAAA (((.(((((.-----(((((((..((((......)))).....))))))).)).((((.(((((((.............))))))).))))....-....----.))).)))... ( -27.82, z-score = -2.67, R) >droAna3.scaffold_13340 21961599 105 - 23697760 CUGUGCUAGUA-----UGGCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAA-UUUC----AAGCACAAAAA .((((((....-----((((((..((((......)))).....)))))).....((((.(((((((.............))))))).))))....-....----.)))))).... ( -26.52, z-score = -2.50, R) >dp4.chr2 22531267 110 + 30794189 CUGUGCUGCUACUCUCUGGCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAA-UUUC----AAGCACAAAAA .((((((..(((...(((((((..((((......)))).....))))))).)))((((.(((((((.............))))))).))))....-....----.)))))).... ( -30.12, z-score = -2.93, R) >droPer1.super_0 9724399 110 + 11822988 CUGUGCUGCUACUCUCUGGCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUCGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAA-UUUC----AAGCACAAAAA .(((((((((((.(.(((((((..((((......)))).....))))))).).))...))).(((((...........((((((....)))))))-))))----.)))))).... ( -25.00, z-score = -1.68, R) >droWil1.scaffold_181108 1035501 105 - 4707319 CUGUGCGACU-----CUGGCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUUCAUGUGGAAAAA-UUUC----AAGCACAAAAA .(((((.((.-----(((((((..((((......)))).....))))))).)).((((.(((((((.............))))))).))))....-....----..))))).... ( -27.52, z-score = -2.45, R) >droMoj3.scaffold_6540 14884000 105 + 34148556 CUGUGUGGCU-----CUGCCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUUUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAAUUUC-----AAAUACAAAAA .((((((((.-----((((.(((.............))).)))).)))(((((.((((.(((((((.............))))))).)))).)))))..-----..))))).... ( -28.34, z-score = -3.44, R) >droVir3.scaffold_13047 3467192 110 + 19223366 CUGUGUGGCU-----CUGCCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUUUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAAUUUCCCAGUAAAAACAAAAA (((..((((.-----((((.(((.............))).)))).))))((((.((((.(((((((.............))))))).)))).))))....)))............ ( -26.74, z-score = -2.73, R) >consensus CUGUGCUGCU_____CUGGCAUAUUGAACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAA_UUUC____AAGCACAAAAA .((.((.........(((((((..((((......)))).....)))))))....((((.(((((((.............))))))).))))...............)).)).... (-20.11 = -20.11 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:40 2011