| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,812,754 – 23,812,820 |
| Length | 66 |
| Max. P | 0.649298 |
| Location | 23,812,754 – 23,812,820 |
|---|---|
| Length | 66 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 82.83 |
| Shannon entropy | 0.32646 |
| G+C content | 0.50349 |
| Mean single sequence MFE | -20.54 |
| Consensus MFE | -11.64 |
| Energy contribution | -12.67 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.649298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23812754 66 - 27905053 UAUCUGAUUCAUGGCUGACUGUGACAAAGUGGCGGGCUUAUGUGUGCGCUGCUUUCACUAUCGGCG .............(((((..((((..(((..(((.((......)).)))..)))))))..))))). ( -26.30, z-score = -3.74, R) >droAna3.scaffold_13340 21951655 63 - 23697760 UAUAUGACUCGCCUCUGACUAAGACAAACUGCCGGGCUUAUGUGUGUUUCACGCUAUCAAGUG--- ....(((...((((...................))))....(((((...)))))..)))....--- ( -7.71, z-score = 1.43, R) >droEre2.scaffold_4820 6237858 66 + 10470090 UAUCUGACUCAUGGCUGACUAUGACAGAGUGGCGGCCUUAUGAGUGCGCUAUUUUCACUAUCGGCG ......(((((((((((.((((......)))))))))..)))))).((((..(......)..)))) ( -18.70, z-score = -1.19, R) >droYak2.chr3R 6145186 66 + 28832112 UAUCUGACUCAUGUCUGACGAUGACAAAGUGGCGGGCUUAUGUGUGCGCUAUUUUCACUAUCGGCG ..((.(((....))).))(((((..(((((((((.((......)).)))))))))...)))))... ( -21.10, z-score = -2.41, R) >droSec1.super_22 435107 66 - 1066717 UAUCUGACUCAUGGCUGACUGUGACAAAGUGGCGGGCUUAUGUGUGCGCUGCUUUCACUAUCGCCG ............(((.((..((((..(((..(((.((......)).)))..)))))))..))))). ( -24.70, z-score = -3.09, R) >droSim1.chr3R 23514805 66 - 27517382 UAUCUGACUCAUGGCUGACUGUGACAAAGUGGCGGGCUUAUGUGUGCGCUGCUUUCACUAUCGCCG ............(((.((..((((..(((..(((.((......)).)))..)))))))..))))). ( -24.70, z-score = -3.09, R) >consensus UAUCUGACUCAUGGCUGACUAUGACAAAGUGGCGGGCUUAUGUGUGCGCUACUUUCACUAUCGGCG ........((((((....)))))).(((((((((.((......)).)))))))))........... (-11.64 = -12.67 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:36 2011