Locus 11783

Sequence ID dm3.chr3R
Location 23,799,340 – 23,799,443
Length 103
Max. P 0.900595
window16194

overview

Window 4

Location 23,799,340 – 23,799,443
Length 103
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 84.23
Shannon entropy 0.28020
G+C content 0.53837
Mean single sequence MFE -35.66
Consensus MFE -21.02
Energy contribution -25.54
Covariance contribution 4.52
Combinations/Pair 1.09
Mean z-score -2.59
Structure conservation index 0.59
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.15
SVM RNA-class probability 0.900595
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 23799340 103 - 27905053
UUUUGUUUCGGCCAAAGUCCGCUAGCGCACUAUCAUCG----AUGGUGCUGUGAGUGUCCUUUUGCCACGGCAGUUAUUGCAGCUGCGCCAGCCUUGUCGCAACAUC
...((((.((((.((((..((((.((((((((((...)----))))))).)).))))..)))).)))...((((((.....))))))............).)))).. ( -35.40, z-score =  -1.72, R)
>droEre2.scaffold_4820 6224465 85 + 10470090
UUUUGUUCCGACCAAAGUCCACUGCCGCACCAUCA----------------------UCCUUUUGCCACGGCAGUUAUUGCAGCUGGACCAGCCAUGUUGCAACAUC
.........(((....))).(((((((...((...----------------------......))...)))))))..((((((((((.....))).))))))).... ( -22.60, z-score =  -1.98, R)
>droYak2.chr3R 6131651 107 + 28832112
UUUUGUUUCGACCAAUGUCCGCUGCCCCACCAUCAUCAUCAUCCAGUGCUGCGAGUGUCCUUUUGCCACGACAGUUAUUGCAGCUGGACCAGCCUUGUUGCAACAUC
...((((.((((....((((((((...................))))(((((((.((((..........))))....))))))).)))).......)))).)))).. ( -23.31, z-score =  -0.22, R)
>droSec1.super_22 421825 103 - 1066717
UUUUGUUUCGGCCAAAGUCCGCUGCCGCACCAUCAUCG----AUGGUGCUGCGAGUGUCCUUUUGCCACGGCAGUUAUUGCAGCUGGGCCAGCCUGGUUGCAACAUC
..(((((..(((.((((..((((((.((((((((...)----))))))).)).))))..)))).)))..)))))...(((((((..((....))..))))))).... ( -48.50, z-score =  -4.51, R)
>droSim1.chr3R 23501485 103 - 27517382
UUUUGUUUCGGCCAAAGUCCGCUGCCGCACCAUCAUCG----AUGGUGCUGCGAGUGUCCUUUUGCCACGGCAGUUAUUGCAGCUGGGCCAGCCUGGUUGCAACAUC
..(((((..(((.((((..((((((.((((((((...)----))))))).)).))))..)))).)))..)))))...(((((((..((....))..))))))).... ( -48.50, z-score =  -4.51, R)
>consensus
UUUUGUUUCGGCCAAAGUCCGCUGCCGCACCAUCAUCG____AUGGUGCUGCGAGUGUCCUUUUGCCACGGCAGUUAUUGCAGCUGGGCCAGCCUUGUUGCAACAUC
..(((((..(((.((((..((((((.(((((((.........))))))).)).))))..)))).)))..)))))...(((((((..((....))..))))))).... (-21.02 = -25.54 +   4.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:49:33 2011